DreEX0022857 @ danRer10
Exon Skipping
Gene
ENSDARG00000012422 | col11a2
Description
collagen, type XI, alpha 2 [Source:ZFIN;Acc:ZDB-GENE-000208-23]
Coordinates
chr19:7269910-7270610:-
Coord C1 exon
chr19:7270557-7270610
Coord A exon
chr19:7270384-7270437
Coord C2 exon
chr19:7269910-7269963
Length
54 bp
Sequences
Splice sites
3' ss Seq
AATTACTTGCATATTTACAGGGT
3' ss Score
5.55
5' ss Seq
GCGGTAAGT
5' ss Score
11.37
Exon sequences
Seq C1 exon
GGTGAGGTTGGAGAGCCAGGACAAAAGGGAGCTAAAGGGTCCAAAGGAGAACAT
Seq A exon
GGTCCTCCTGGTCCACCTGGGCCGATGGGTCCTGTTGGACAGCCTGGTGCAGCG
Seq C2 exon
GGTTTGCCAGGCCCAGGTGGAGAAAAGGGAGAGACAGGAGATGTTGGACCCTTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000012422_MULTIEX2-16/23=15-18
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
PF0139113=Collagen=FE(21.2=100),PF0139113=Collagen=PU(6.5=27.8)
A:
PF0139113=Collagen=FE(20.7=100),PF0139113=Collagen=PU(12.9=44.4)
C2:
PF0139113=Collagen=PD(20.8=88.9),PF0139113=Collagen=PU(19.7=77.8)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGTGAGGTTGGAGAGCCAGG
R:
CAAGGGTCCAACATCTCCTGT
Band lengths:
108-162
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]