HsaEX6046566 @ hg38
Exon Skipping
Gene
ENSG00000204248 | COL11A2
Description
collagen type XI alpha 2 chain [Source:HGNC Symbol;Acc:HGNC:2187]
Coordinates
chr6:33169383-33171324:-
Coord C1 exon
chr6:33171271-33171324
Coord A exon
chr6:33171114-33171167
Coord C2 exon
chr6:33169383-33169490
Length
54 bp
Sequences
Splice sites
3' ss Seq
GACTCTCTTCTCTTACCCAGGGC
3' ss Score
8.3
5' ss Seq
GCGGTGAGT
5' ss Score
10.49
Exon sequences
Seq C1 exon
GGTGAGGTGGGGGACCCCGGACAGAAGGGCACCAAAGGGAACAAGGGTGAACAT
Seq A exon
GGCCCTCCTGGACCCCCTGGACCCATTGGTCCTGTGGGGCAGCCTGGAGCAGCG
Seq C2 exon
GGTCCACGCGGGGAACGTGGAGAGAAAGGAGAGTCGGGGCAGCCAGGAGAGCCAGGGCCACCAGGGCCTAAAGGCCCCACAGGCGATGATGGCCCCAAAGGGAACCCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000204248_MULTIEX2-20/37=19-26
Average complexity
C3
Mappability confidence:
85%=100=88%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
PF0139113=Collagen=FE(18.5=100),PF0139113=Collagen=PU(2.8=11.1)
A:
PF0139113=Collagen=FE(18.5=100),PF0139113=Collagen=FE(23.6=100)
C2:
PF0139113=Collagen=FE(42.2=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGGACCCCGGACAGAAGG
R:
CTTTGGGGCCATCATCGCC
Band lengths:
144-198
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains