MmuEX6100100 @ mm10
Exon Skipping
Gene
ENSMUSG00000059316 | Slc27a4
Description
solute carrier family 27 (fatty acid transporter), member 4 [Source:MGI Symbol;Acc:MGI:1347347]
Coordinates
chr2:29811186-29812402:+
Coord C1 exon
chr2:29811186-29811395
Coord A exon
chr2:29811569-29811686
Coord C2 exon
chr2:29812265-29812402
Length
118 bp
Sequences
Splice sites
3' ss Seq
CTAAATCTCGGCCTTTGCAGGTG
3' ss Score
7.78
5' ss Seq
CCTGTCAAC
5' ss Score
-15.8
Exon sequences
Seq C1 exon
ATTGTACAGTACATTGGCGAGCTCTGCCGCTACCTCCTGAACCAGCCACCCCGTGAGGCTGAGTCTCGGCACAAGGTGCGCATGGCACTGGGCAACGGTCTCCGGCAGTCCATCTGGACCGACTTCTCCAGCCGTTTCCACATCCCCCAGGTGGCTGAGTTCTATGGGGCCACTGAATGCAACTGTAGCCTGGGCAACTTTGACAGCCGG
Seq A exon
GTGGGGGCCTGTGGCTTCAATAGCCGCATCCTGTCCTTTGTGTACCCTATCCGTTTGGTACGTGTCAATGAGGATACCATGGAACTGATCCGGGGACCCGATGGAGTCTGCATTCCCT
Seq C2 exon
GTCAGCCAGGCCAGCTGGTGGGTCGCATCATCCAGCAGGACCCTCTGCGCCGTTTCGACGGGTACCTCAACCAGGGTGCCAACAACAAGAAGATTGCTAATGATGTCTTCAAGAAGGGGGACCAAGCCTACCTCACTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000059316-'27-16,'27-15,28-16
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0050123=AMP-binding=FE(15.9=100)
A:
PF0050123=AMP-binding=FE(9.7=100)
C2:
PF0050123=AMP-binding=FE(10.6=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACAGTACATTGGCGAGCTCTG
R:
AGAGGGTCCTGCTGGATGATG
Band lengths:
251-369
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types