DreEX6087273 @ danRer10
Exon Skipping
Gene
ENSDARG00000017047 | slc27a4
Description
solute carrier family 27 (fatty acid transporter), member 4 [Source:ZFIN;Acc:ZDB-GENE-050417-248]
Coordinates
chr10:10813687-10817221:+
Coord C1 exon
chr10:10813687-10813896
Coord A exon
chr10:10815716-10815842
Coord C2 exon
chr10:10817084-10817221
Length
127 bp
Sequences
Splice sites
3' ss Seq
ACATGATGTTTTAATTTCAGACA
3' ss Score
7.12
5' ss Seq
CAGGTACAG
5' ss Score
8.68
Exon sequences
Seq C1 exon
ATTGTGCAGTACATTGGTGAAATCTGCCGCTATCTGCTGAACCAGCCCAGAAAGGACACGGAGCGCAAGCACAAAGTGCGCATGGCACTCGGGAACGGCCTTCGCCAGTCCATCTGGGAGGAATTCACCAACCGCTTCAATGTACCACAGATCGCTGAGTTTTACGGTGCCACTGAGTGCAACTGTAGCCTGGGCAACTTCGACAACAAG
Seq A exon
ACAGGTGCTTGTGGATTTAATAGCCGAATCCTGCCCTATGTCTACCCTATCCGCTTGGTCAAAGTGGATGAGGAGACCATGGAGCTCATCAGAGGACCTGATGGAGTCTGTATCCCATGCGGTCCAG
Seq C2 exon
GAGAGCCTGGTCAGCTGGTGGGTCGAATCATTCAGAACGACCCCCTCAGGCGATTTGATGGCTACGTCAATCAGACAGCCACTAATAAGAAAATTGCCCAGGATGTCTTCAAAAAGGGAGACAGTGCATATTTGTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000017047-'11-11,'11-9,12-11=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0050123=AMP-binding=FE(15.9=100)
A:
PF0050123=AMP-binding=FE(9.7=100)
C2:
PF0050123=AMP-binding=FE(10.6=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGAACCAGCCCAGAAAGGAC
R:
TGACGTAGCCATCAAATCGCC
Band lengths:
243-370
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]