GgaEX6015036 @ galGal3
Exon Skipping
Gene
ENSGALG00000004965 | SLC27A4
Description
NA
Coordinates
chr17:5606261-5607130:-
Coord C1 exon
chr17:5606921-5607130
Coord A exon
chr17:5606581-5606707
Coord C2 exon
chr17:5606261-5606398
Length
127 bp
Sequences
Splice sites
3' ss Seq
CTGAGCACATTCTGTCCTAGGTC
3' ss Score
7.2
5' ss Seq
CAGGTGAGG
5' ss Score
10.07
Exon sequences
Seq C1 exon
ATTGTGCAGTACATTGGGGAGATCTGCCGCTACCTGCTGAACCAGCCCTACCAGGAGGTGGAGCGGCAGCACCGGGTGCGCATGGCGCTGGGCAATGGGCTGCGAGCTTCCATCTGGCGAGAGTTCATGGCCCGCTTTGGCATCGCCCAGGTGGCTGAGTTCTACGGGGCCACCGAGTGCAACTGCAGCCTGGGGAACTTCGATAATAAC
Seq A exon
GTCGGGTCCTGTGGCTTCAACAGCAGGATCTTGCCAGGAGTGTACCCCATTGGCTTGGTGAAAGTGGATGAAGACACCATGGAGCTGATCCGGGGGCCGGATGGTGTCTGCATCCGCTGCAAACCAG
Seq C2 exon
GGGAGCCGGGGCAGCTGGTGGGCCGCATTGTCAAGAGCAACCCCCTGCAGCACTTCGATGGCTACCTGAATCAGTCAGCCACCAGCAAGAAAATTGCCAGGGACGTGTTTGCAAAAGGGGATGCTGCCTATCTCACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000004965-'8-9,'8-8,9-9=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0050123=AMP-binding=FE(15.9=100)
A:
PF0050123=AMP-binding=FE(9.7=100)
C2:
PF0050123=AMP-binding=FE(10.6=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTTCCATCTGGCGAGAGTTC
R:
TGTGAGATAGGCAGCATCCCC
Band lengths:
242-369
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]