MmuEX6100100 @ mm9
Exon Skipping
Gene
ENSMUSG00000059316 | Slc27a4
Description
solute carrier family 27 (fatty acid transporter), member 4 [Source:MGI Symbol;Acc:MGI:1347347]
Coordinates
chr2:29666706-29667922:+
Coord C1 exon
chr2:29666706-29666915
Coord A exon
chr2:29667089-29667215
Coord C2 exon
chr2:29667785-29667922
Length
127 bp
Sequences
Splice sites
3' ss Seq
CTAAATCTCGGCCTTTGCAGGTG
3' ss Score
7.78
5' ss Seq
CAGGTCTGC
5' ss Score
5.61
Exon sequences
Seq C1 exon
ATTGTACAGTACATTGGCGAGCTCTGCCGCTACCTCCTGAACCAGCCACCCCGTGAGGCTGAGTCTCGGCACAAGGTGCGCATGGCACTGGGCAACGGTCTCCGGCAGTCCATCTGGACCGACTTCTCCAGCCGTTTCCACATCCCCCAGGTGGCTGAGTTCTATGGGGCCACTGAATGCAACTGTAGCCTGGGCAACTTTGACAGCCGG
Seq A exon
GTGGGGGCCTGTGGCTTCAATAGCCGCATCCTGTCCTTTGTGTACCCTATCCGTTTGGTACGTGTCAATGAGGATACCATGGAACTGATCCGGGGACCCGATGGAGTCTGCATTCCCTGTCAACCAG
Seq C2 exon
GTCAGCCAGGCCAGCTGGTGGGTCGCATCATCCAGCAGGACCCTCTGCGCCGTTTCGACGGGTACCTCAACCAGGGTGCCAACAACAAGAAGATTGCTAATGATGTCTTCAAGAAGGGGGACCAAGCCTACCTCACTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000059316-'9-10,'9-9,10-10=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0050123=AMP-binding=FE(15.9=100)
A:
PF0050123=AMP-binding=FE(9.7=100)
C2:
PF0050123=AMP-binding=FE(10.6=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACAGTACATTGGCGAGCTCTG
R:
AGAGGGTCCTGCTGGATGATG
Band lengths:
251-378
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: