BtaEX0033001 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000015436 | SLC27A4
Description
Bos taurus solute carrier family 27 (fatty acid transporter), member 4 (SLC27A4), mRNA. [Source:RefSeq mRNA;Acc:NM_001075667]
Coordinates
chr11:98966431-98967602:+
Coord C1 exon
chr11:98966431-98966640
Coord A exon
chr11:98966816-98966942
Coord C2 exon
chr11:98967465-98967602
Length
127 bp
Sequences
Splice sites
3' ss Seq
CCAAGGCTTGGCCTTCGCAGGTG
3' ss Score
4.93
5' ss Seq
CAGGTCTGC
5' ss Score
5.61
Exon sequences
Seq C1 exon
ATCGTGCAGTACATCGGCGAACTGTGCCGCTACCTCCTGAACCAGCCACCCCGGGAGGCGGAGGGCCAGCACCGGGTGCGCATGGCACTCGGCAATGGCCTCCGGCAGTGCATCTGGACCGACTTCTGTAGCCGCTTCCACATCCCCCAGGTGGCCGAGTTCTACGGGGCCACGGAGTGCAACTGCAGCCTGGGCAACTTCGACGGCCAG
Seq A exon
GTGGGGGCCTGTGGCTTCAACAGCCGCATCCTGTCCTTCGTGTACCCCATCCGGCTGGTTCGCGTCAACGAGGACACCATGGAGCTGATCCGGGGCCCTGACGGCCTTTGCATTCCCTGCAAGCCAG
Seq C2 exon
GTGAGCCGGGCCAGCTGGTGGGCGTCATCATCCAGGAAGACCCCCTGCGGCGCTTCGATGGCTACCTGAACCAGGGCACCAACGACAAGAAGATTGCCGGGGATGTCTTCAAGAAGGGGGACCAGGCCTACCTCAGCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000015436_CASSETTE2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0050123=AMP-binding=FE(15.9=100)
A:
PF0050123=AMP-binding=FE(9.7=100)
C2:
PF0050123=AMP-binding=FE(10.6=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGTACATCGGCGAACTGTGC
R:
AGGGGGTCTTCCTGGATGATG
Band lengths:
250-377
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development