RnoEX0082088 @ rn6
Exon Skipping
Gene
ENSRNOG00000014369 | Slc27a4
Description
solute carrier family 27 member 4 [Source:RGD Symbol;Acc:1307383]
Coordinates
chr3:8371824-8372992:+
Coord C1 exon
chr3:8371824-8372033
Coord A exon
chr3:8372175-8372292
Coord C2 exon
chr3:8372855-8372992
Length
118 bp
Sequences
Splice sites
3' ss Seq
CTGAGTCTCGGCCTTTGCAGGTG
3' ss Score
8.36
5' ss Seq
CCTGTCAAC
5' ss Score
-15.8
Exon sequences
Seq C1 exon
ATTGTACAGTACATTGGTGAGCTTTGCCGCTACCTCCTGAACCAGCCACCCCGTGAGGCTGAGTCTCGGCACAAGGTGCGCATGGCACTGGGCAACGGTCTCCGGCAGTCCATCTGGACCGACTTCTCCAGCCGTTTCCACATTCCCCAAGTGGCCGAGTTCTACGGGGCCACCGAGTGCAACTGTAGCTTGGGCAACTTTGACAGCCAG
Seq A exon
GTGGGGGCCTGTGGCTTCAATAGCCGCATCCTGTCCTTTGTGTACCCCATCCGCTTGGTACGAGTCAATGAGGATACCATGGAACTGATCCGGGGACCCGATGGCGTCTGCATTCCCT
Seq C2 exon
GCCAGCCAGGCCAGCTGGTGGGTCGCATCATCCAGCAGGACCCCCTACGCCGTTTTGATGGCTACCTCAACCAGGGTGCCAACAACAAGAAGATTGCTAGTGATGTCTTCAAGAAAGGGGACCAAGCCTACCTCACTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000014369-'13-15,'13-14,14-15
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0050123=AMP-binding=FE(15.9=100)
A:
PF0050123=AMP-binding=FE(9.7=100)
C2:
PF0050123=AMP-binding=FE(10.6=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Chicken
(galGal4)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTTTGCCGCTACCTCCTGAAC
R:
GGTAGCCATCAAAACGGCGTA
Band lengths:
255-373
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]