MmuEX6100242 @ mm9
Exon Skipping
Gene
ENSMUSG00000052533 | Nup188
Description
nucleoporin 188 [Source:MGI Symbol;Acc:MGI:2446190]
Coordinates
chr2:30179040-30181059:+
Coord C1 exon
chr2:30179040-30179154
Coord A exon
chr2:30180748-30180868
Coord C2 exon
chr2:30180993-30181059
Length
121 bp
Sequences
Splice sites
3' ss Seq
CACAGAATGCTCTCCCACAGGGG
3' ss Score
6.32
5' ss Seq
TAGGTAATG
5' ss Score
7.57
Exon sequences
Seq C1 exon
TGCGGAGGGAATGAATGCTGGAGGGTATGGCAGCCTTCTGATGAACAGTGAGCAGCCCCAGGGCGAATATGGGGTCACCATTGCCTTTCTGCGCCTGGTCACCACGCTTGTCAAG
Seq A exon
GGGCAGCTTGGTAGTACCCAGAGCCAAGGCCTGGTGCCTTGTGTGATGTTCGTGTTGAAGGAGATGCTTCCCAGCTACCACAAATGGCGCTACAACTCTCATGGCGTGCGAGAGCTGATAG
Seq C2 exon
GTTGCCTAATTCTGGAGCTGATTCATGCAATACTGAACCTGTGCCAAGAGACAGAGCTGCATAGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000052533-'25-28,'25-27,26-28=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF104874=Nup188=FE(4.4=100),PF118943=DUF3414=FE(11.8=100)
A:
PF104874=Nup188=FE(4.6=100),PF118943=DUF3414=FE(12.5=100)
C2:
PF104874=Nup188=FE(2.5=100),PF118943=DUF3414=FE(6.9=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGGAGGGAATGAATGCTGGAG
R:
GCTATGCAGCTCTGTCTCTTGG
Band lengths:
178-299
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: