GgaEX1040866 @ galGal4
Exon Skipping
Gene
ENSGALG00000004548 | NUP188
Description
nucleoporin NUP188 homolog [Source:RefSeq peptide;Acc:NP_001025861]
Coordinates
chr17:5415895-5416733:+
Coord C1 exon
chr17:5415895-5416009
Coord A exon
chr17:5416320-5416440
Coord C2 exon
chr17:5416667-5416733
Length
121 bp
Sequences
Splice sites
3' ss Seq
AACATTTCTGTTTCTTCTAGGGA
3' ss Score
10.26
5' ss Seq
TTGGTAAGG
5' ss Score
8.92
Exon sequences
Seq C1 exon
TGCAGAGGGAATGAATGCTGGGGGCTATGGGAACCTGCTGATGAGTATAGAGCAGCCTCAAGGCGAGTACAGCGTTACCATCTCCTTCCTGAACCTCATCACGACTCTGGTCCGG
Seq A exon
GGACAACTTGGTAGCACCCAGAGCCAAGGGCTTGTGCCCTGCATTGTGTTTGTCCTGAAGGAGATGTTACCAAATTACCACAAATGGCGTTACAACTCTCATGGAGTGAGGGAGAAAATTG
Seq C2 exon
GATGCCTCATTCTACAATTGATTCATGCAATACTGAATTTATGCCCTGAAATGGATCCTCGCAGTAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000004548_CASSETTE3
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF104874=Nup188=FE(4.1=100)
A:
PF104874=Nup188=FE(4.4=100)
C2:
PF104874=Nup188=FE(2.4=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGCAGAGGGAATGAATGCTGG
R:
CTGCGAGGATCCATTTCAGGG
Band lengths:
179-300
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]