MmuEX6100242 @ mm10
Exon Skipping
Gene
ENSMUSG00000052533 | Nup188
Description
nucleoporin 188 [Source:MGI Symbol;Acc:MGI:2446190]
Coordinates
chr2:30323520-30325539:+
Coord C1 exon
chr2:30323520-30323634
Coord A exon
chr2:30325228-30325348
Coord C2 exon
chr2:30325473-30325539
Length
121 bp
Sequences
Splice sites
3' ss Seq
CACAGAATGCTCTCCCACAGGGG
3' ss Score
6.32
5' ss Seq
TAGGTAATG
5' ss Score
7.57
Exon sequences
Seq C1 exon
TGCGGAGGGAATGAATGCTGGAGGGTATGGCAGCCTTCTGATGAACAGTGAGCAGCCCCAGGGCGAATATGGGGTCACCATTGCCTTTCTGCGCCTGGTCACCACGCTTGTCAAG
Seq A exon
GGGCAGCTTGGTAGTACCCAGAGCCAAGGCCTGGTGCCTTGTGTGATGTTCGTGTTGAAGGAGATGCTTCCCAGCTACCACAAATGGCGCTACAACTCTCATGGCGTGCGAGAGCTGATAG
Seq C2 exon
GTTGCCTAATTCTGGAGCTGATTCATGCAATACTGAACCTGTGCCAAGAGACAGAGCTGCATAGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000052533-'30-45,'30-36,32-45=AN
Average complexity
A_S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF104874=Nup188=FE(4.1=100)
A:
PF104874=Nup188=FE(4.4=100)
C2:
PF104874=Nup188=FE(2.4=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGGAGGGAATGAATGCTGGAG
R:
GCTATGCAGCTCTGTCTCTTGG
Band lengths:
178-299
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types