DreEX6082864 @ danRer10
Exon Skipping
Gene
ENSDARG00000030022 | nup188
Description
nucleoporin 188 [Source:ZFIN;Acc:ZDB-GENE-030131-7184]
Coordinates
chr21:4408680-4411137:+
Coord C1 exon
chr21:4408680-4408794
Coord A exon
chr21:4408916-4409036
Coord C2 exon
chr21:4411071-4411137
Length
121 bp
Sequences
Splice sites
3' ss Seq
TTTTCCCAATGTGTGAGTAGGGT
3' ss Score
4.47
5' ss Seq
TCGGTGAGC
5' ss Score
9.1
Exon sequences
Seq C1 exon
TGCGGAGGGCATGAAGGCGGGAAACTATGGAAATCTGCTGGTGTTGATAGAACAGCCCAGAGGAGAGTACAGCGTCACCATTGCCTTTTTAAGACTGGTGACCACACTTGTCAAG
Seq A exon
GGTCAGCTGGGCAGTACTCAGAGCAGAGGACTCATCCCATGTGTGCTGCTGGTGCTGAAGGAGATGCTGCCGACGTATCATAAATGGCGCTACAACACATATGGAGTGCGAGAGAGAATCG
Seq C2 exon
GTTGTTTGATCCTAGAGCTGGTTCATGCTATTCTCAATTTGAATCAGGAGTGCGAGTCAGAGGGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000030022-'26-26,'26-25,27-26=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF104874=Nup188=FE(4.1=100)
A:
PF104874=Nup188=FE(4.3=100)
C2:
PF104874=Nup188=FE(2.4=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGGGCATGAAGGCGGGAAA
R:
CTGCCCTCTGACTCGCACTC
Band lengths:
178-299
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]