MmuEX6100295 @ mm9
Exon Skipping
Gene
ENSMUSG00000026857 | Mettl11a
Description
methyltransferase like 11A [Source:MGI Symbol;Acc:MGI:1913867]
Coordinates
chr2:30670879-30676221:+
Coord C1 exon
chr2:30670879-30671018
Coord A exon
chr2:30675149-30675352
Coord C2 exon
chr2:30675969-30676221
Length
204 bp
Sequences
Splice sites
3' ss Seq
CCTGCCTCTTCCGTGTTCAGGGG
3' ss Score
11.55
5' ss Seq
AGGGTAGGC
5' ss Score
7.26
Exon sequences
Seq C1 exon
GATTTAGAATTCCCCCTGTACTTGAGGACTAACTCCTTTTGAAGTTATGTGCGCCAGGCCCCCACCTCTGCCACCTGATGAAAGGCAGCAGTCCTAGCTGAAGTTGATCATGAGTTTCCTCCCTCCAAGCCTTATTCCAG
Seq A exon
GGGAGCAGCGCGGTGGCTGGCGACTTCACGGCTGGTGACGTCATGACGAGCGAGGTGATTGAGGATGAGAAACAGTTTTATTCGAAGGCCAAGACCTACTGGAAGCAGATCCCACCCACGGTGGACGGCATGCTCGGGGGGTATGGCCACATCTCCAACATCGACCTCAACAGCTCCCGGAAGTTTCTGCAGAGGTTTTTAAGG
Seq C2 exon
GAAGGCCCAAACAAGACAGGGACTTCCTGTGCCTTGGACTGTGGCGCTGGTATTGGAAGGATCACCAAGCGCCTGCTCCTGCCACTCTTCAGGGTGGTCGACATGGTCGACGTGACGGAAGACTTTCTGGCCAAAGCCAAGACCTACCTGGGGGAAGAGGGCAAGAGGGTGAGGAACTACTTCTGCTGTGGGCTGCAGGACTTCAGCCCTGAGCCTGGCTCCTATGACGTGATCTGGATCCAGTGGGTGATAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000026857-'3-8,'3-6,8-8=AN
Average complexity
A_C3
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion (Ref, Alt. ATG (<=10 exons))
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.023 C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
PF058917=Methyltransf_PK=PU(21.3=85.2)
C2:
PF058917=Methyltransf_PK=FE(38.9=100),PF044449=Dioxygenase_N=WD(100=51.8)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAAAGGCAGCAGTCCTAGCTG
R:
CCCACTGGATCCAGATCACGT
Band lengths:
308-512
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: