GgaEX7009770 @ galGal4
Exon Skipping
Gene
ENSGALG00000017611 | METTL11A
Description
alpha N-terminal protein methyltransferase 1A [Source:RefSeq peptide;Acc:NP_001264618]
Coordinates
chr17:5643632-5644991:+
Coord C1 exon
chr17:5643632-5643705
Coord A exon
chr17:5644397-5644592
Coord C2 exon
chr17:5644739-5644991
Length
196 bp
Sequences
Splice sites
3' ss Seq
TCCCCCCCCTTGAGGAGCAGTGA
3' ss Score
-4.21
5' ss Seq
CGGGTAGGT
5' ss Score
8.53
Exon sequences
Seq C1 exon
GTCACAGCACAGCCACGCTGGGATCTGGATGCCGAGCTGAGGACCCCAAAACTGCCTCCGCTGCCATAGGAAAG
Seq A exon
TGAGTCCCACAAGGGTGCGTGCCCCGCAGCCAGCATGACGAGCGAGGTGGTGGAGAATGAGTTTGAGTTTTACTCCAAGGCAGAGAAGTACTGGAAGGATGTGCCCGCCACAGTGGACGGCATGCTGGGGGGCTACGGCCACATCTCCAGCATCGACATCAACAGCTCCAGGAAATTCCTGCAGCGGTTTCTGCGG
Seq C2 exon
GATGGCCCCAACCGGACGGGAACAACCCGTGCCCTGGACTGCGGGGCTGGCATTGGCCGCATCACCAAGAGGCTGCTGCTGCCCCTCTTCAAGACAGTGGACATGGTGGATGTGACCGAGGACTTCCTCACCAAGGCCAAGAGCTACCTGGGGGAGGAGGGCAGGCGGGTGCGCAACTACTTCTGCTGTGGCCTCCAGGACTTCAGCCCTGAGCCCAATTCCTATGACGTCATCTGGATCCAGTGGGTCATTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000017611-'6-5,'6-3,12-5=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
In the CDS, with uncertain impact
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.077 C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
PF058917=Methyltransf_PK=PU(21.3=70.8)
C2:
PF058917=Methyltransf_PK=FE(38.9=100),PF044449=Dioxygenase_N=WD(100=51.8)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCTCCGCTGCCATAGGAAAG
R:
ATAGGAATTGGGCTCAGGGCT
Band lengths:
245-441
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]