RnoEX0061326 @ rn6
Exon Skipping
Gene
ENSRNOG00000024809 | Ntmt1
Description
N-terminal Xaa-Pro-Lys N-methyltransferase 1 [Source:RGD Symbol;Acc:1306582]
Coordinates
chr3:9643047-9656867:+
Coord C1 exon
chr3:9643047-9643171
Coord A exon
chr3:9655836-9656039
Coord C2 exon
chr3:9656615-9656867
Length
204 bp
Sequences
Splice sites
3' ss Seq
CCTGCCTCTTCCGTGTTCAGGGG
3' ss Score
11.55
5' ss Seq
AGGGTAGGC
5' ss Score
7.26
Exon sequences
Seq C1 exon
GACAAAGGCAGAGGCCGCGAGGTGTCTGGTCCGGTAGAGTGGTGGCGGCAGCCGTGGGCTACGGTCTTTGCCAGCCTCCTCCTCAACCCGTCCTTGTCTTTCGAGTCCCTGGAGCCACCACCTAG
Seq A exon
GGGAGCAGAGCAGTGGCTGGTGACTGTGCAGCTGGTGACGTCATGACAAGCGAGGTGATCGAAGATGAGAAACAGTTTTATTCGAAGGCCAAGACCTACTGGAAGCAGATTCCGCCCACGGTGGACGGCATGCTCGGGGGGTATGGCCACATCTCCAACATCGACCTCAACAGCTCCCGGAAGTTTCTGCAGAGGTTTTTAAGG
Seq C2 exon
GAAGGCCCAAACAAGACGGGGACTTCCTGTGCCCTGGACTGTGGTGCTGGCATTGGAAGGATCACCAAGCGCCTGCTCCTGCCGCTCTTCAGGGTGGTTGACATGGTCGACGTGACGGAAGACTTTCTGGCCAAAGCCAAGACCTACCTGGGGGAAGAGGGCAAGAGGGTGAGGAACTACTTCTGCTGTGGGCTGCAGGACTTCAGCCCTGAGCCCAGCTCCTATGACGTGATCTGGATCCAGTGGGTGATAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000024809-'6-11,'6-9,19-11
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion (Ref, Alt. ATG (<=10 exons))
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.019 C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
PF058917=Methyltransf_PK=PU(21.3=85.2)
C2:
PF058917=Methyltransf_PK=FE(38.9=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGGTGTCTGGTCCGGTAGAG
R:
GCCCACAGCAGAAGTAGTTCC
Band lengths:
300-504
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]