MmuEX6100295 @ mm10
Exon Skipping
Gene
ENSMUSG00000026857 | Ntmt1
Description
N-terminal Xaa-Pro-Lys N-methyltransferase 1 [Source:MGI Symbol;Acc:MGI:1913867]
Coordinates
chr2:30807826-30823033:+
Coord C1 exon
chr2:30807826-30808083
Coord A exon
chr2:30819629-30819832
Coord C2 exon
chr2:30822362-30823033
Length
204 bp
Sequences
Splice sites
3' ss Seq
CCTGCCTCTTCCGTGTTCAGGGG
3' ss Score
11.55
5' ss Seq
AGGGTAGGC
5' ss Score
7.26
Exon sequences
Seq C1 exon
GGCGATCTGGCCCTGGGGAGGGGCTATCTGTCTGTGGAGAGGGATGAGCTAGTCTTGGGGCGGAGTGAACTGGCCTCGGGGCGGAGCGATCTTGAGTCCAGCCCCCTCCAGGCTCGGGGAAGTGACGTGTGCGGACAAAGGCAGAGGCCGCGAGGTGTCTGGTCCGGTAGAGTGGTGGCGGCTGCTGTGGGCTACGGTCTTTGCCAGCCTCCTTCTCAACCCGTCCTTTTCTCTCGGGTCCCTGGAGCCCCGACCCAG
Seq A exon
GGGAGCAGCGCGGTGGCTGGCGACTTCACGGCTGGTGACGTCATGACGAGCGAGGTGATTGAGGATGAGAAACAGTTTTATTCGAAGGCCAAGACCTACTGGAAGCAGATCCCACCCACGGTGGACGGCATGCTCGGGGGGTATGGCCACATCTCCAACATCGACCTCAACAGCTCCCGGAAGTTTCTGCAGAGGTTTTTAAGG
Seq C2 exon
GCCACCTGACGGATCAGCACCTGGCTGAGTTTCTGCGCCGCTGCAAGCGGGGCCTGCGCCCCAATGGCATCATCGTCATCAAGGACAACATGGCCCAGGAGGGTGTGATCCTGGACGATGTGGACAGCAGTGTGTGCCGGGACCTTGAGGTGGTCCGCCGGATCATCCGCACTGCAGGCCTCAGCCTCCTGGCCGAGGAGCGCCAGGAGAACCTGCCAGATGAGATCTACCATGTCTACAGCTTTGCCCTGAGATGAAGCCAGGGCCAGAGCTGGGGGCCAGCAGCTGGCAGGCCAAGAGACACACCATTGACTCCAGTGGGAAGGGTCAAGCCCTAGGGGAGGTGTGCCCTGGATTGGGGCACTGCAGCCCTGTCACTCTAAAGCACCCTGGCAACTTCCCACAGGGCTATGGAAAGCAGAGTTGGTCACCGCTGGTCTAGCTGCCTGAGGGGAAAGACTTCACTTGGTTGCCTAGGGACCTCAATGTGTGGACTGCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000026857_MULTIEX1-5/6=C1-C2
Average complexity
C2*
Mappability confidence:
100%=100=100%
Protein Impact
In the CDS, with uncertain impact
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.028 C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
PF058917=Methyltransf_PK=PU(21.3=85.2)
C2:
PF058917=Methyltransf_PK=PD(38.9=97.7)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAACCCGTCCTTTTCTCTCGG
R:
GCTTCATCTCAGGGCAAAGCT
Band lengths:
302-506
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types