DreEX6011752 @ danRer10
Exon Skipping
Gene
ENSDARG00000022399 | ntmt1
Description
N-terminal Xaa-Pro-Lys N-methyltransferase 1 [Source:ZFIN;Acc:ZDB-GENE-040426-2055]
Coordinates
chr5:31902444-31905123:-
Coord C1 exon
chr5:31905081-31905123
Coord A exon
chr5:31902953-31903127
Coord C2 exon
chr5:31902444-31902696
Length
175 bp
Sequences
Splice sites
3' ss Seq
TTTTGGATCCCTTTGGCCAGGAG
3' ss Score
4.28
5' ss Seq
GGGGTGAGT
5' ss Score
7.93
Exon sequences
Seq C1 exon
GCGATTGCAAGAAGCGGCAGTCAGCGAGAGCACGAAAGCAAAG
Seq A exon
GAGTTGCACAAAGATGGAAGACTGTTTGATAGAAGACCAAACGTCCTTTTACTCAAAGGCAGAGCACTACTGGAAGGACGTCCCGCCCACTGTGGATGGAATGCTGGGAGGTTATGGCAGCATCTCCAGTATTGACATTAACGGCTCAAAAAAGTTTCTTCAGAAATTCCTTGGG
Seq C2 exon
GAAGGCCAGGGTAAGACTGGCACAGGTTGTGCTCTGGACTGTGGCGCTGGGATTGGCAGGATCACCAAGCGGCTGCTCCTGCCACTCTTTCGAACAGTAGATCTTGTGGACGTGACTCAGGAATTCCTGGATAAAGCTCGTACATACCTGGGTGAGGAGAGCAAACGGGTGGAGAACTACTTCTGCTGTGGCCTGCAAGACTTTCAGCCCCAGCCAGAGCGATACGATGTCATATGGATCCAGTGGGTGATTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000022399-'0-3,'0-1,5-3=AN
Average complexity
A_C2
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion (Ref, Alt. ATG (<=10 exons))
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
PF058917=Methyltransf_PK=PU(21.3=85.2)
C2:
PF058917=Methyltransf_PK=FE(38.9=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCAAGAAGCGGCAGTCAGC
R:
TGAAAGTCTTGCAGGCCACAG
Band lengths:
243-418
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]