BtaEX6046628 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000015437 | NTMT1
Description
N-terminal Xaa-Pro-Lys N-methyltransferase 1 [Source:HGNC Symbol;Acc:HGNC:23373]
Coordinates
chr11:100042202-100048752:+
Coord C1 exon
chr11:100042202-100042349
Coord A exon
chr11:100047576-100047789
Coord C2 exon
chr11:100048500-100048752
Length
214 bp
Sequences
Splice sites
3' ss Seq
CACTTTCCTTTCCTTCTCAGGAA
3' ss Score
10.94
5' ss Seq
AGGGTAGGC
5' ss Score
7.26
Exon sequences
Seq C1 exon
GGGCAAAAGCGGCGCGCGCCGCGAGGTGTCGCTTCCAGCCAAGGTTGGACGGAGCTGGTCGTGGGCAGGTGGGGGCTCTTCGGCCCTGCCGCCCCTCTTTTCCGCTTCCCCGTCCTCTTCTCCCGCGTCCCGGGAGCCCCCACCCGGG
Seq A exon
GAACCACCAGTGCTGAGTTTGGTGCCTGGGCAGAGACGCGGCTGCTGACAGCATGACGAGCGAGGTGATCGAGGACGAGAAGCAGTTCTACTCCAAGGCCAAGACGTACTGGAAGGAGGTCCCTGCCACCGTGGACGGCATGCTCGGGGGGTATGGCCACATCTCCAGCATCGACATCAACAGCTCCCGGAAGTTCCTGCAGAGGTTTCTGAGG
Seq C2 exon
GAAGGCCCGAACAAGACGGGGACCTCATACGCCCTGGACTGCGGAGCCGGCATTGGGAGGATCACCAAGCGGCTGCTCTTGCCTCTCTTTGGAGTGGTGGACATGGTGGATGTAACAGAGGACTTCCTGGTCAAGGCTAAGACCTACCTGGGCGAGGAGGGCAAGAGAGTGAGGAACTTCTTCTGCTGCGGCCTGCAGGACTTCAGCCCCGAGCCACAGTCCTACGATGTGATCTGGATCCAGTGGGTGATAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000015437-'9-2,'9-1,15-2=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion (Ref, Alt. ATG (<=10 exons))
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
PF058917=Methyltransf_PK=PU(21.3=85.2)
C2:
PF058917=Methyltransf_PK=FE(38.9=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTCTTTTCCGCTTCCCCGTC
R:
ACCCACTGGATCCAGATCACA
Band lengths:
302-516
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]