MmuEX6100802 @ mm10
Exon Skipping
Gene
ENSMUSG00000035875 | AI182371
Description
expressed sequence AI182371 [Source:MGI Symbol;Acc:MGI:2138853]
Coordinates
chr2:35086101-35088831:-
Coord C1 exon
chr2:35088740-35088831
Coord A exon
chr2:35086431-35086513
Coord C2 exon
chr2:35086101-35086163
Length
83 bp
Sequences
Splice sites
3' ss Seq
CAACTGTTTGGCTTTCCCAGGCA
3' ss Score
7.06
5' ss Seq
ACGGTAATC
5' ss Score
4.8
Exon sequences
Seq C1 exon
GATCCTGAAGGGTCCCAAGTTGACACAATAGAGGGAAATAATCTCACCGGGATTGCCTCTTTTCCTGACTTCGAGATTCCTTCTAATCCCAA
Seq A exon
GCACGGTAGATGGACAGTCAAGGCTAAGTATAGAGAAGATGCTTCAAAAACTGGAACTACATACTTTGAAGTTAAAGAATACG
Seq C2 exon
ATAAAACTTACAGAATATCTATCATGCCCACAATTGATCTGCAACCCGAGGTGGAAAAGCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000035875-'10-17,'10-16,13-17=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.065 A=0.138 C2=0.140
Domain overlap (PFAM):
C1:
PF0183514=A2M_N=FE(31.6=100)
A:
PF0183514=A2M_N=PD(25.3=82.8)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCCTGAAGGGTCCCAAGTTGA
R:
CTTGCTTTTCCACCTCGGGTT
Band lengths:
153-236
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types