RnoEX0002977 @ rn6
Exon Skipping
Gene
ENSRNOG00000022033 | AABR07051507.1
Description
NA
Coordinates
chr3:14277180-14279925:-
Coord C1 exon
chr3:14279834-14279925
Coord A exon
chr3:14277529-14277611
Coord C2 exon
chr3:14277180-14277242
Length
83 bp
Sequences
Splice sites
3' ss Seq
CAAACATTTGGCTTTCACAGACT
3' ss Score
6.68
5' ss Seq
ATGGTAATC
5' ss Score
4.14
Exon sequences
Seq C1 exon
GACCCCGAAGGATCCGAAGTTGGCATAATAGGGGGAAGAAATGGCACGGGAATTGCCTCTTTTCCTGACTTCAAGATCCCTTCTAATCCTAA
Seq A exon
ACTTGGTAGGTGGACTATTAAGGCTAACTATAGAGAAGACGCTTCAACAACTGGAACTACACACTTTGAAGTTCAAGGACATG
Seq C2 exon
AGAAAGCTTTCAAAATGGCTGTCATGCCCACAACCGATCTGCAACAGAAGATGGAAAAGCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000022033_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
NonCoding
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGAAGGATCCGAAGTTGGCAT
R:
TTCCATCTTCTGTTGCAGATCGG
Band lengths:
143-226
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]