RnoEX6016573 @ rn6
Exon Skipping
Gene
ENSRNOG00000022033 | AABR07051507.1
Description
NA
Coordinates
chr3:14277469-14280340:-
Coord C1 exon
chr3:14280270-14280340
Coord A exon
chr3:14279834-14279925
Coord C2 exon
chr3:14277469-14277611
Length
92 bp
Sequences
Splice sites
3' ss Seq
TTGGTTTTGTTTCCCCAAAGGAC
3' ss Score
8.61
5' ss Seq
TAAGTATGT
5' ss Score
4.58
Exon sequences
Seq C1 exon
TGAAGGTTGCCGTCTACTCAGTGGATGATGACCTAGAGCCTGTCACCAGAACAACAGTCTTGACTTTCATA
Seq A exon
GACCCCGAAGGATCCGAAGTTGGCATAATAGGGGGAAGAAATGGCACGGGAATTGCCTCTTTTCCTGACTTCAAGATCCCTTCTAATCCTAA
Seq C2 exon
ACTTGGTAGGTGGACTATTAAGGCTAACTATAGAGAAGACGCTTCAACAACTGGAACTACACACTTTGAAGTTCAAGGACATGGTAATCCTTGGCCATTCCAACTTATTTCTAGAGAGTTAGCCCCCCCCCACACACACACAC
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000022033-'3-6,'3-5,5-6=AN
Average complexity
A_C3
Mappability confidence:
100%=100=100%
Protein Impact
NonCoding
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAAGGTTGCCGTCTACTCAGTG
R:
TGGCCAAGGATTACCATGTCC
Band lengths:
167-259
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]