MmuEX6101642 @ mm10
Exon Skipping
Gene
ENSMUSG00000026893 | Gca
Description
grancalcin [Source:MGI Symbol;Acc:MGI:1918521]
Coordinates
chr2:62685965-62690074:+
Coord C1 exon
chr2:62685965-62686008
Coord A exon
chr2:62686277-62686424
Coord C2 exon
chr2:62689961-62690074
Length
148 bp
Sequences
Splice sites
3' ss Seq
TTTGTTAATAAAACCGTTAGAGA
3' ss Score
-1.38
5' ss Seq
TGGGTAAGA
5' ss Score
8.91
Exon sequences
Seq C1 exon
CTTTCAGTTTGGAAACCTGCAGAATTATGATTGCCATGTTGGAT
Seq A exon
AGAGACTACACAGGAAAAATGGGGTTCAACGAATTCAAGGAGCTTTGGGCCGCTCTTAATGCCTGGAAGCAGAACTTCATGACCATTGACCAAGATCAAAGTGGCACGGTAGAACATCATGAGCTGAGTCAAGCCATCGCTCTTATGG
Seq C2 exon
GCTACAGGTTGAGTCCACAGACATTAGCTGCAATTGTCAGACGCTACAGCAAGAATGGCCGGATTTTCTTTGATGACTATGTTGCCTGCTGTGTGAAGCTGCGCGCCCTGACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000026893-'6-14,'6-6,9-14=AN
Average complexity
A_S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.010 C2=0.000
Domain overlap (PFAM):
C1:
PF138331=EF-hand_8=FE(24.1=100),PF0154011=Lipoprotein_7=PU(11.9=53.3)
A:
PF138331=EF-hand_8=PD(31.0=36.0),PF0154011=Lipoprotein_7=FE(73.1=100)
C2:
PF134991=EF-hand_7=PD(50.0=76.9)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTTCAGTTTGGAAACCTGCAGA
R:
CGCAGCTTCACACAGCAGG
Band lengths:
146-294
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types