GgaEX1055424 @ galGal3
Exon Skipping
Gene
ENSGALG00000008985 | SRI
Description
NA
Coordinates
chr2:20927028-20928504:-
Coord C1 exon
chr2:20928461-20928504
Coord A exon
chr2:20927299-20927446
Coord C2 exon
chr2:20927028-20927141
Length
148 bp
Sequences
Splice sites
3' ss Seq
TTTCTTAGCTTTGAAATCAGAGG
3' ss Score
0.08
5' ss Seq
TGGGTAAGT
5' ss Score
10.24
Exon sequences
Seq C1 exon
CTTTCAACTTGGAGACATGCAGACTCATGATCTCAATGCTGGAC
Seq A exon
AGGGATATGTCTGGCACACTGGGATTTAATGAGTTTAAGGAACTGTGGGCTGTGGTCAATGGCTGGAAGCAACACTTTGTAAATTTTGACAGTGATAGAAGTGGCGCGGTGGATCGCCAAGAACTGGAGAAAGCCTTGGCAAATATGG
Seq C2 exon
GATTTAGATTGAGCCCGCAGGCAGTGTCTGCCATCACCAGGCGATACAGCACTCATGGAAAGATTACATTTGATGATTACATCGCCTGCTGTGTGAAACTCAGAGCTCTCACTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000008985-'5-6,'5-4,6-6=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF138331=EF-hand_8=FE(24.6=100)
A:
PF138331=EF-hand_8=PD(29.8=34.0),PF134991=EF-hand_7=PU(48.3=58.0)
C2:
PF134991=EF-hand_7=PD(50.0=76.9)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAACTTGGAGACATGCAGACTCA
R:
CAGTGAGAGCTCTGAGTTTCACA
Band lengths:
154-302
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]