HsaEX0061728 @ hg19
Exon Skipping
Gene
ENSG00000075142 | SRI
Description
sorcin [Source:HGNC Symbol;Acc:11292]
Coordinates
chr7:87838654-87846506:-
Coord C1 exon
chr7:87846437-87846506
Coord A exon
chr7:87839298-87839443
Coord C2 exon
chr7:87838654-87838767
Length
146 bp
Sequences
Splice sites
3' ss Seq
TCCTTGATTACAGTTCAGAGAGA
3' ss Score
-18.66
5' ss Seq
TGGGTAGGT
5' ss Score
6.86
Exon sequences
Seq C1 exon
GATGGGCAGATAGATGCTGATGAATTGCAGAGATGTCTGACACAGTCTGGCATTGCTGGAGGATACAAAC
Seq A exon
AGATATGTCTGGCACAATGGGTTTCAATGAATTTAAAGAACTCTGGGCTGTACTGAATGGCTGGAGACAACACTTTATCAGTTTTGACACTGACAGGAGTGGAACAGTAGACCCACAAGAATTGCAGAAGGCCCTGACAACAATGG
Seq C2 exon
GATTTAGGTTGAGTCCCCAGGCTGTGAATTCAATTGCAAAACGATACAGCACCAATGGAAAGATCACCTTCGACGACTACATCGCCTGCTGCGTCAAACTGAGGGCTCTTACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000075142_MULTIEX1-3/3=C1-C2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
In the CDS, with uncertain impact
No structure available
Features
Disorder rate (Iupred):
C1=0.018 A=0.025 C2=0.000
Domain overlap (PFAM):
C1:
PF111973=DUF2835=FE(63.9=100),PF134051=EF-hand_6=PD(64.5=83.3)
A:
PF138331=EF-hand_8=PD(31.0=36.0),PF134991=EF-hand_7=PU(48.3=58.0)
C2:
PF134991=EF-hand_7=PD(50.0=76.9)
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGGCAGATAGATGCTGATGA
R:
TAAGAGCCCTCAGTTTGACGC
Band lengths:
179-325
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)