MmuEX0044918 @ mm9
Exon Skipping
Gene
ENSMUSG00000003161 | Sri
Description
sorcin [Source:MGI Symbol;Acc:MGI:98419]
Coordinates
chr5:8062384-8063750:+
Coord C1 exon
chr5:8062384-8062427
Coord A exon
chr5:8063260-8063407
Coord C2 exon
chr5:8063637-8063750
Length
148 bp
Sequences
Splice sites
3' ss Seq
CATCCTTGATTATAATCCAGAGA
3' ss Score
2.8
5' ss Seq
TGGGTTTGT
5' ss Score
0.77
Exon sequences
Seq C1 exon
CTTTTAACCTGGAGACTTGTCGCCTTATGGTTTCAATGTTGGAT
Seq A exon
AGAGATATGTCCGGCACGATGGGGTTCAATGAATTCAAAGAGCTCTGGGCTGTGCTGAATGGCTGGAGACAACACTTCATCAGTTTCGATAGCGATAGGAGTGGCACCGTGGATCCCCAGGAGCTACAGAAGGCCCTGACGACTATGG
Seq C2 exon
GATTCAGGTTGAGCCCCCAAACTGTGAATTCAGTTGCAAAGCGATACAGCACCAGCGGGAAGATCACGTTTGATGACTACATTGCCTGCTGTGTCAAACTGAGGGCTCTCACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000003161-'11-11,'11-9,13-11
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.020 C2=0.000
Domain overlap (PFAM):
C1:
PF138331=EF-hand_8=PD(39.0=66.7)
A:
PF138331=EF-hand_8=PD(31.0=36.0),PF134991=EF-hand_7=PU(48.3=58.0)
C2:
PF134991=EF-hand_7=PD(50.0=76.9)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTTTAACCTGGAGACTTGTCGCC
R:
TGAGAGCCCTCAGTTTGACAC
Band lengths:
154-302
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: