RnoEX6012538 @ rn6
Exon Skipping
Gene
ENSRNOG00000049780 | Sri
Description
sorcin [Source:RGD Symbol;Acc:1584485]
Coordinates
chr4:23011457-23012825:-
Coord C1 exon
chr4:23012782-23012825
Coord A exon
chr4:23011792-23011939
Coord C2 exon
chr4:23011457-23011570
Length
148 bp
Sequences
Splice sites
3' ss Seq
TGTCCTTGACTATAATCCAGAGA
3' ss Score
2.52
5' ss Seq
TGGGTTTGT
5' ss Score
0.77
Exon sequences
Seq C1 exon
CTTTTAACCTGGAGACTTGTCGCCTTATGGTTTCAATGCTGGAT
Seq A exon
AGAGATATGTCTGGCACGATGGGGTTCAGTGAGTTCAGAGAGCTCTGGACTGTGCTGAGTGGCTGGAGACAACACTTCATCAGCTTCGACAGTGATAGGAGTGGGACAGTGGATCCCCAGGAGCTGCAGAAGGCCCTAACCACTATGG
Seq C2 exon
GGTTCAGGTTGAGCCCCCAAACCGTGAATTCAGTAGCAAAGCGGTACAGCACCAGCGGGAAGATCACCTTTGATGACTACATAGCCTGCTGTGTCAAACTGAGGGCTCTCACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000049780-'7-10,'7-8,10-10=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.020 C2=0.000
Domain overlap (PFAM):
C1:
PF138331=EF-hand_8=FE(24.1=100)
A:
PF138331=EF-hand_8=PD(31.0=36.0),PF134991=EF-hand_7=PU(48.3=58.0)
C2:
PF134991=EF-hand_7=PD(50.0=76.9)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTTTAACCTGGAGACTTGTCGCC
R:
TGAGAGCCCTCAGTTTGACAC
Band lengths:
154-302
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]