GgaEX1055424 @ galGal4
Exon Skipping
Gene
ENSGALG00000008985 | SRI
Description
sorcin [Source:RefSeq peptide;Acc:NP_001074334]
Coordinates
chr2:20867698-20869174:-
Coord C1 exon
chr2:20869131-20869174
Coord A exon
chr2:20867969-20868116
Coord C2 exon
chr2:20867698-20867811
Length
148 bp
Sequences
Splice sites
3' ss Seq
TTTCTTAGCTTTGAAATCAGAGG
3' ss Score
0.08
5' ss Seq
TGGGTAAGT
5' ss Score
10.24
Exon sequences
Seq C1 exon
CTTTCAACTTGGAGACATGCAGACTCATGATCTCAATGCTGGAC
Seq A exon
AGGGATATGTCTGGCACACTGGGATTTAATGAGTTTAAGGAACTGTGGGCTGTGGTCAATGGCTGGAAGCAACACTTTGTAAATTTTGACAGTGATAGAAGTGGCGCGGTGGATCGCCAAGAACTGGAGAAAGCCTTGGCAAATATGG
Seq C2 exon
GATTTAGATTGAGCCCGCAGGCAGTGTCTGCCATCACCAGGCGATACAGCACTCATGGAAAGATTACATTTGATGATTACATCGCCTGCTGTGTGAAACTCAGAGCTCTCACTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000008985_MULTIEX1-4/6=3-5
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF138331=EF-hand_8=FE(24.6=100)
A:
PF138331=EF-hand_8=PD(29.8=34.0),PF134991=EF-hand_7=PU(48.3=58.0)
C2:
PF134991=EF-hand_7=PD(50.0=76.9)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAACTTGGAGACATGCAGACTCA
R:
CAGTGAGAGCTCTGAGTTTCACA
Band lengths:
154-302
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]