BtaEX6027880 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000010390 | SRI
Description
Bos taurus sorcin (SRI), mRNA. [Source:RefSeq mRNA;Acc:NM_001075350]
Coordinates
chr4:72777676-72779037:-
Coord C1 exon
chr4:72778994-72779037
Coord A exon
chr4:72778028-72778175
Coord C2 exon
chr4:72777676-72777789
Length
148 bp
Sequences
Splice sites
3' ss Seq
AATCCTTGATTACAGTTCAGAGA
3' ss Score
-2.2
5' ss Seq
TGGGTGGGT
5' ss Score
3.82
Exon sequences
Seq C1 exon
CTTTTAACCTGGAGACTTGCCGGCTTATGGTTTCAATGCTGGAT
Seq A exon
AGAGACATGTCAGGCACAATGGGTTTCAATGAATTTAAAGAACTCTGGGCTGTACTGAATGGCTGGAGACAACACTTTATCAGTTTCGACAGTGATAGGAGTGGAACAGTGGATCCCCAAGAATTGCAGAAGGCCCTGACAACAATGG
Seq C2 exon
GATTTAGGTTGAGTCCCCAGGCTGTGAATTCAATTGCAAAACGATACAGTACCAATGGAAAGATCACCTTCGATGATTACATCGCCTGTTGCGTCAAGCTGCGAGCTCTAACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000010390-'12-11,'12-8,13-11=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.020 C2=0.000
Domain overlap (PFAM):
C1:
PF138331=EF-hand_8=FE(24.1=100)
A:
PF138331=EF-hand_8=PD(31.0=36.0),PF134991=EF-hand_7=PU(48.3=58.0)
C2:
PF134991=EF-hand_7=PD(50.0=76.9)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTTAACCTGGAGACTTGCCGG
R:
CTCGCAGCTTGACGCAACAG
Band lengths:
147-295
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]