MmuEX6101673 @ mm10
Exon Skipping
Gene
ENSMUSG00000061171 | Slc38a11
Description
solute carrier family 38, member 11 [Source:MGI Symbol;Acc:MGI:2443383]
Coordinates
chr2:65316430-65364026:-
Coord C1 exon
chr2:65363881-65364026
Coord A exon
chr2:65363347-65363467
Coord C2 exon
chr2:65316430-65361401
Length
121 bp
Sequences
Splice sites
3' ss Seq
TATTTTATCTATTAAAATAGAGA
3' ss Score
3.9
5' ss Seq
TAGGTAAGC
5' ss Score
8.89
Exon sequences
Seq C1 exon
TCCTTCCATCTCGCTGGCGAACTTAAGCGGGCAAAACCTGCAGGGGAGTTTGGCCTGGTGGGAGCCTGCTTCCCAGCCTCAGAACCTGCCCTTGCGCAGATGCAGACATGAGCTATCAGCAGCCACAGCTGAGCGGTCCTCTGCAG
Seq A exon
AGAGAGACAGACTCGAGTGACAGAGAAAGCCTGATCTCCGGACATGAACACGGAGGGAAATCTAGTCAGTCTGCCGCTGTTTTCAATGTAGTCAATTCTGTTATAGGATCTGGGATAATAG
Seq C2 exon
GATTGCCTTATTCAATGAAGCAAGCTGGATTTCCCTTGGGAATACTGCTTTTATTCTTGGTCTCATACATCACAGGTAAGTAGCATATAACTGCATATCCCTACAACTTAAGTTGTGCAATGACTTCTTCCCTTGCACAAATACATCCTGCAATTGGATTTCCTACTTCATTAAGAAGCGCATCAAAGCGGCCTAAGGAATTTAAGCACCACATCTGAGGAGATTTGCTTTCCTCCCTAATCCTTTAAACAGATTAGTAAGAGTAGCGCAAAGCTATATCACAAAGCTTAAAGCTGGTCATGTGGTTTTTTCACTTCGAGCAGAACATGGCGAATGAGAAAGTTGTTTCCAAGACTGGTGGCAGCTGAGAAGACACTACTCCCCAGTGCCCAAGGCAGAGCTATGTGGCAGGTGCATGCAGATTGGCAGCCATTGTTGGCTGTGTTTGTGTAGGTGATGCTGGGGGTTTGGGTGTTCAGCTGGCAAGGCCAGCCCCTTCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000061171-'1-4,'1-1,2-4
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.615 A=0.294 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF0149013=Aa_trans=PU(12.0=51.2)
C2:
PF0149013=Aa_trans=PD(15.4=60.2),PF141451=YrhK=PD(64.4=63.6)
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGCAGATGCAGACATGAGCTA
R:
TTCCTTAGGCCGCTTTGATGC
Band lengths:
252-373
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types