BtaEX0033180 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000007650 | SLC38A11
Description
Bos taurus solute carrier family 38, member 11 (SLC38A11), mRNA. [Source:RefSeq mRNA;Acc:NM_001031760]
Coordinates
chr2:31391774-31394979:+
Coord C1 exon
chr2:31391774-31391943
Coord A exon
chr2:31392624-31392741
Coord C2 exon
chr2:31394905-31394979
Length
118 bp
Sequences
Splice sites
3' ss Seq
ATTTTTATATACTGAAATAGAGC
3' ss Score
4.14
5' ss Seq
TAGGTAAGT
5' ss Score
9.66
Exon sequences
Seq C1 exon
TGGGGCGAATTGCTTCCGCAGAGCCTCAACCCGGCTCTCTCCCGGCGCCCTGACGCCGGGCTCGGAGGTCGCGGAGGAGTCGAGGACCCGCGCCCGCGAACCTTCCACCCGCGGAAGACCCGGGTGCAGCCATGGGCTACCCCGGGCAGAGGCCCGTCATCCCGCCGCAG
Seq A exon
AGCCATCGAGATGACAGAGAAACCCTGGTTTCTGAACATAAGCACAAAGGGAAAACTTGTCGTCAGTCTGCTGCCGTTTTTAATGTTGTCAACTCAATTATAGGGTCTGGTATAATAG
Seq C2 exon
GATTGCCTTATTCAATGAAGCAAGCTGGCTTTCCTCTGGGAATATTGCTTTTATTCTGGGTTTCATATGTTACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000007650-'1-1,'1-0,3-1
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.769 A=0.375 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF0149013=Aa_trans=PU(42.3=55.0)
C2:
PF0149013=Aa_trans=FE(48.1=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGGGCGAATTGCTTCCG
R:
ACATATGAAACCCAGAATAAAAGCA
Band lengths:
240-358
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development