DreEX0072763 @ danRer10
Exon Skipping
Gene
ENSDARG00000040257 | slc38a11
Description
solute carrier family 38, member 11 [Source:ZFIN;Acc:ZDB-GENE-050417-122]
Coordinates
chr9:50309944-50322558:+
Coord C1 exon
chr9:50309944-50310084
Coord A exon
chr9:50310165-50310282
Coord C2 exon
chr9:50322484-50322558
Length
118 bp
Sequences
Splice sites
3' ss Seq
TTATGTTTTTTTATTCTCAGATG
3' ss Score
9.55
5' ss Seq
TAGGTAATG
5' ss Score
7.57
Exon sequences
Seq C1 exon
TGGGCGGTCTGGAGGAATCAAGCGGACACTTTTAATAGCGCCAGGACATGGGAGACCCTCCATCTGCACCAGCAGGACATCACTGAAGGGCTGTTTTTAATGGAAAACGACAAAAGAGAGAAAAGCGACAAAGCTCAAAAG
Seq A exon
ATGGAAAGTGAAAGGAGTTGTTTGTTGTCCTCACATGATGCTGGGAAAGGTGGAAGTAGTTCGGTGTCCTCGGCCTCATTTAATTTCATCAACTCTATAATAGGAAGCGGGATTATAG
Seq C2 exon
GTTTACCATATTCCATGAGTCAGGCCGGACTGCCAATGGGTCTTCTGCTGCTTATTCTGGTTGCCTTCATTACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000040257-'3-6,'3-5,4-6
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.964 A=0.141 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF0149013=Aa_trans=PU(19.5=55.0)
C2:
PF0149013=Aa_trans=FE(22.1=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGGCGGTCTGGAGGAATC
R:
TGAAGGCAACCAGAATAAGCAGC
Band lengths:
210-328
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]