GgaEX7006026 @ galGal4
Exon Skipping
Gene
ENSGALG00000011052 | SLC38A11
Description
solute carrier family 38, member 11 [Source:HGNC Symbol;Acc:HGNC:26836]
Coordinates
chr7:19501055-19504804:+
Coord C1 exon
chr7:19501055-19501479
Coord A exon
chr7:19504206-19504323
Coord C2 exon
chr7:19504730-19504804
Length
118 bp
Sequences
Splice sites
3' ss Seq
TTGTTGTCTTCCTGAAACAGATA
3' ss Score
8.17
5' ss Seq
TAGGTAAGT
5' ss Score
9.66
Exon sequences
Seq C1 exon
CTGTATATTTGCAAAGTATCCCCCCTCAGTGAGAGGTCCCAGCTGAAGATAACTGAGGTAACTAAGGATTCCAAATATTGGCACGGTAATTTTACCTCTTTCCAAGTAGCTCAACATAAACGAGGAGAAAAAAAAAACAAGAGTAGCGTCTCTGCACATGGGCACGTCCCCGGCGCAGGCAGGCGCTGTGGAGCGGGACCAGCCGGCTGTGTGGAAAGGCGGGAAGCGGCCGGCTGCCGTGCCTCCGCCCGCCAGAGGGGAGCCCGCGCTGCCCATCTGGGGGCTGCTCCGGGAGGAGCGCGAGAGTCGCCCCGCGCTTCTGTGCTTCCTCCTCTGGGGTCCGCGGGCGCGAGGAGGCGCGAGGAGAGCGGCACGCGGCCATGGAGCGCGGCAGGACCGAGCAGCCACCGGCCGGGGCCCCGCAG
Seq A exon
ATAGAAACAGATGACCATACAGCCCTGGTTAGTAAGCCCAGGAATAAAGGAGGAAATGGTGATCTGGCATCAGCTGGATTTAACATTATCAACTCCATTATAGGATCAGGTATTATAG
Seq C2 exon
GACTGCCCTATTCAATGAAAGAAGCTGGTTTTCCTTTAGGAGTACTGCTTCTGTTTGGGGTTGCCTATATCACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000011052-'0-2,'0-1,2-2=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.956 A=0.350 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF0149013=Aa_trans=PU(44.0=55.0)
C2:
PF0149013=Aa_trans=FE(50.0=100)
Main Skipping Isoform:
ENSGALT00000018002fB12074
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGTGTGGAAAGGCGGGAAG
R:
CCAGCTTCTTTCATTGAATAGGGC
Band lengths:
247-365
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]