RnoEX6017104 @ rn6
Exon Skipping
Gene
ENSRNOG00000004966 | Slc38a11
Description
solute carrier family 38, member 11 [Source:RGD Symbol;Acc:1306005]
Coordinates
chr3:51414065-51416646:-
Coord C1 exon
chr3:51416608-51416646
Coord A exon
chr3:51416063-51416183
Coord C2 exon
chr3:51414065-51414139
Length
121 bp
Sequences
Splice sites
3' ss Seq
CACTTTATCTATTCAAACAGAGA
3' ss Score
6.36
5' ss Seq
TAGGTAAGC
5' ss Score
8.89
Exon sequences
Seq C1 exon
ATGAGCTACCAGCAGCCACAGCTGAGGGGTCCTCTGCAG
Seq A exon
AGAGAGACAGACCCGAGTGACAGAGAGAGCCTGGTCTCCGGACATGAACACGGAGGGAAATCGAGTCAGTCTGCAGCTGTTTTCAATGTAGTCAATTCTGTTATAGGATCTGGGATAATAG
Seq C2 exon
GATTGCCCTATTCAATGAAGCAAGCCGGATTTCCCTTGGGAATACTGCTTTTATTCTGGGTCTCATACATCACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000004966-'0-1,'0-0,1-1=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.615 A=0.390 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF0149013=Aa_trans=PU(22.9=53.7)
C2:
PF0149013=Aa_trans=FE(26.0=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTACCAGCAGCCACAGC
R:
CTGTGATGTATGAGACCCAGAA
Band lengths:
110-231
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]