MmuEX6101673 @ mm9
Exon Skipping
Gene
ENSMUSG00000061171 | Slc38a11
Description
solute carrier family 38, member 11 [Source:MGI Symbol;Acc:MGI:2443383]
Coordinates
chr2:65199384-65202083:-
Coord C1 exon
chr2:65201938-65202083
Coord A exon
chr2:65201404-65201524
Coord C2 exon
chr2:65199384-65199458
Length
121 bp
Sequences
Splice sites
3' ss Seq
TATTTTATCTATTAAAATAGAGA
3' ss Score
3.9
5' ss Seq
TAGGTAAGC
5' ss Score
8.89
Exon sequences
Seq C1 exon
TCCTTCCATCTCGCTGGCGAACTTAAGCGGGCAAAACCTGCAGGGGAGTTTGGCCTGGTGGGAGCCTGCTTCCCAGCCTCAGAACCTGCCCTTGCGCAGATGCAGACATGAGCTATCAGCAGCCACAGCTGAGCGGTCCTCTGCAG
Seq A exon
AGAGAGACAGACTCGAGTGACAGAGAAAGCCTGATCTCCGGACATGAACACGGAGGGAAATCTAGTCAGTCTGCCGCTGTTTTCAATGTAGTCAATTCTGTTATAGGATCTGGGATAATAG
Seq C2 exon
GATTGCCTTATTCAATGAAGCAAGCTGGATTTCCCTTGGGAATACTGCTTTTATTCTTGGTCTCATACATCACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000061171-'1-3,'1-1,2-3=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.592 A=0.321 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF0149013=Aa_trans=PU(22.9=53.7)
C2:
PF0149013=Aa_trans=FE(26.0=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCCTTCCATCTCGCTGGCG
R:
TGATGTATGAGACCAAGAATAAAAGC
Band lengths:
218-339
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: