MmuEX6103063 @ mm9
Exon Skipping
Gene
ENSMUSG00000040479 | Dgkz
Description
diacylglycerol kinase zeta [Source:MGI Symbol;Acc:MGI:1278339]
Coordinates
chr2:91776859-91777311:-
Coord C1 exon
chr2:91777211-91777311
Coord A exon
chr2:91777015-91777094
Coord C2 exon
chr2:91776859-91776928
Length
80 bp
Sequences
Splice sites
3' ss Seq
AGGGCCTCTCTGTCTTGTAGCTG
3' ss Score
7.71
5' ss Seq
CGGGTAACT
5' ss Score
5.86
Exon sequences
Seq C1 exon
CCAGCAGCCAGTTCCTGAGCAGCTGAGGATCCAGGTGAGCAGGGTCAGTATGCACGACTACGAGGCTCTACATTATGACAAGGAGCAGCTCAAGGAAGCCT
Seq A exon
CTGTGCCTCTGGGCACTGTGGTGGTCCCCGGAGACAGTGACCTGGAGCTCTGCCGCGCCCACATTGAGAGACTGCAGCGG
Seq C2 exon
GAGCCCGATGGGGCTGGAGCCAAGTCCCCGATGTGCCACCAACTCTCCTCCAAGTGGTGTTTCCTGGATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000040479-'32-44,'32-42,33-44=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.257 A=0.296 C2=0.375
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGCAGCCAGTTCCTGAGC
R:
CCAGGAAACACCACTTGGAGG
Band lengths:
167-247
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: