BtaEX6060535 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000013636 | DGKZ
Description
diacylglycerol kinase, zeta [Source:HGNC Symbol;Acc:HGNC:2857]
Coordinates
chr15:77245103-77245532:+
Coord C1 exon
chr15:77245103-77245203
Coord A exon
chr15:77245294-77245373
Coord C2 exon
chr15:77245463-77245532
Length
80 bp
Sequences
Splice sites
3' ss Seq
ACGGCCGCCCTGCCCTGCAGCTG
3' ss Score
8.52
5' ss Seq
CAGGTGAGG
5' ss Score
10.07
Exon sequences
Seq C1 exon
CCAGCAGCCGGTGCCGGAGCAGCTGCGAGTCCAGGTGAGCAGGGTCAGCATGCACGACTACGAGGCCCTGCACTACGACAAGGAGCAGCTCAAAGAGGCTT
Seq A exon
CTGTGCCGCTGGGCACTGTGGTGGTCCCAGGAGACAGCGACCTGGAGCTGTGCCGCGCTCACATCGAGAGGCTCCGGCAG
Seq C2 exon
GAGCCCGAAGGTGCTGGAGCCAAGTCCCCGATGTGCCAGAAACTGTCCCCCAAGTGGTGCTTCCTCGATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000013636-'32-35,'32-34,33-35=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.286 A=0.074 C2=0.375
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
AGCTGCGAGTCCAGGTGAG
R:
CATCGAGGAAGCACCACTTGG
Band lengths:
151-231
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]