GgaEX1019523 @ galGal4
Exon Skipping
Gene
ENSGALG00000008380 | DGKZ
Description
diacylglycerol kinase zeta [Source:RefSeq peptide;Acc:NP_001026363]
Coordinates
chr5:22959148-22960832:-
Coord C1 exon
chr5:22960732-22960832
Coord A exon
chr5:22960514-22960593
Coord C2 exon
chr5:22959148-22959217
Length
80 bp
Sequences
Splice sites
3' ss Seq
GTGTGTCCCATTTTGTGCAGCTG
3' ss Score
8.12
5' ss Seq
GAGGTGAGG
5' ss Score
8.41
Exon sequences
Seq C1 exon
CCAGCAGCCAGTGCCTGAGCGGCTGCGAATCCGAGTGAGCCGAATCAGCATGCGCGACTACGAGGCACTGCACTATGACAAGGAAAAGCTGAAGGAAGCCT
Seq A exon
CTGTGCCGCTGGGGATCATCGTGGTTCCAGGGGACAGTGACCTGGAGTTGTGCCGGACCCAAATTGAGAGGCTGCAGGAG
Seq C2 exon
GAAGGAGATGGAGCCAAACCGAAGACATTGTCATCCCAGAAACTGTCACCAAAATGGTGTTTCCTGGACT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000008380-'36-36,'36-33,37-36
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.086 A=0.148 C2=0.292
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
GGCTGCGAATCCGAGTGAG
R:
AGTCCAGGAAACACCATTTTGG
Band lengths:
151-231
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]