DreEX6100906 @ danRer10
Exon Skipping
Gene
ENSDARG00000076025 | dgkzb
Description
diacylglycerol kinase, zeta b [Source:ZFIN;Acc:ZDB-GENE-111104-4]
Coordinates
chr25:7720348-7724685:+
Coord C1 exon
chr25:7720348-7720448
Coord A exon
chr25:7720552-7720631
Coord C2 exon
chr25:7724616-7724685
Length
80 bp
Sequences
Splice sites
3' ss Seq
GTGTTCTGTTTTCCTTTCAGCGA
3' ss Score
12.25
5' ss Seq
GAGGTGCTT
5' ss Score
3.62
Exon sequences
Seq C1 exon
TCAGCAGCCCATCGCAGAGACAGTGCAGATCCAAGTGAACCGTATCAGTATGCATGATTATGAAGCTCTCCATTATGATAAGGAGCAGCTCAAAGAAGCCG
Seq A exon
CGATTCCCATGGGGATAATTACAGTTCCTGGGAACAGTGATTTGGAGACGTGTCGGCAGCATATCGAGAGGTTGCATGAG
Seq C2 exon
GAGGGGGATGGGATGAATACAGACACACTGCACATGCCAAAGCTTTCACCAAAATGGTGCTTCCTGGACT
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000076025-'23-29,'23-28,25-29=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.370 C2=0.417
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
CAGCCCATCGCAGAGACAGT
R:
AGTCCAGGAAGCACCATTTTGG
Band lengths:
167-247
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]