GgaEX1019523 @ galGal3
Exon Skipping
Gene
ENSGALG00000008380 | DGKZ
Description
NA
Coordinates
chr5:25814571-25816255:-
Coord C1 exon
chr5:25816155-25816255
Coord A exon
chr5:25815937-25816016
Coord C2 exon
chr5:25814571-25814640
Length
80 bp
Sequences
Splice sites
3' ss Seq
GTGTGTCCCATTTTGTGCAGCTG
3' ss Score
8.12
5' ss Seq
GAGGTGAGG
5' ss Score
8.41
Exon sequences
Seq C1 exon
CCAGCAGCCAGTGCCTGAGCGGCTGCGAATCCGAGTGAGCCGAATCAGCATGCGCGACTACGAGGCACTGCACTATGACAAGGAAAAGCTGAAGGAAGCCT
Seq A exon
CTGTGCCGCTGGGGATCATCGTGGTTCCAGGGGACAGTGACCTGGAGTTGTGCCGGACCCAAATTGAGAGGCTGCAGGAG
Seq C2 exon
GAAGGAGATGGAGCCAAACCGAAGACATTGTCATCCCAGAAACTGTCACCAAAATGGTGTTTCCTGGACT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000008380-'24-25,'24-23,25-25=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.086 A=0.222 C2=0.354
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGCTGCGAATCCGAGTGAG
R:
AGTCCAGGAAACACCATTTTGG
Band lengths:
151-231
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]