RnoEX0027563 @ rn6
Exon Skipping
Gene
ENSRNOG00000017737 | Dgkz
Description
diacylglycerol kinase zeta [Source:RGD Symbol;Acc:70929]
Coordinates
chr3:80847930-80848378:-
Coord C1 exon
chr3:80848278-80848378
Coord A exon
chr3:80848092-80848171
Coord C2 exon
chr3:80847930-80847999
Length
80 bp
Sequences
Splice sites
3' ss Seq
AGGGCCTCCCTGTCTTCCAGCTG
3' ss Score
8.13
5' ss Seq
CAGGTAAAT
5' ss Score
8.76
Exon sequences
Seq C1 exon
TCAGCAGCCAGTTCCTGAGCAGCTGAGGATCCAAGTGAGCAGGGTCAGCATGCACGACTACGAGGCTCTCCATTATGACAAGGAGCAGCTCAAGGAGGCCT
Seq A exon
CTGTGCCTCTGGGTACTGTGGTGGTCCCCGGAGACAGTGACCTAGAGCTCTGCCGAGCCCACATTGAGAGACTCCAGCAG
Seq C2 exon
GAGCCCGATGGGGCTGGAGCCAAGTCCCCCATGTGCCACCCACTGTCCTCCAAGTGGTGTTTCCTGGACG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000017737-'44-50,'44-49,45-50
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.257 A=0.333 C2=0.417
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGCAGCCAGTTCCTGAGC
R:
CCAGGAAACACCACTTGGAGG
Band lengths:
167-247
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]