DreEX6006484 @ danRer10
Exon Skipping
Gene
ENSDARG00000014439 | dgkza
Description
diacylglycerol kinase, zeta a [Source:ZFIN;Acc:ZDB-GENE-111104-3]
Coordinates
chr7:38828875-38835765:+
Coord C1 exon
chr7:38828875-38828975
Coord A exon
chr7:38831784-38831863
Coord C2 exon
chr7:38835721-38835765
Length
80 bp
Sequences
Splice sites
3' ss Seq
TCTTTCCATCCTTATTGCAGCGA
3' ss Score
9.15
5' ss Seq
GAGGTAAAA
5' ss Score
7.3
Exon sequences
Seq C1 exon
TCAGCAACCGTTTCCAGAACGACTACGGATCAGAGTGAGCCGTATCAGCATGCATGATTATGAAGCTTTGCACTACGACAAGGAGAAGCTCAAAGAAGCTT
Seq A exon
CGATTCCACTGGGTCTCATCGTTGTCCCTGGAGACAGTGATTTGGAAACCTGCCGAGCTCACATCGAGAGACTACAGGAG
Seq C2 exon
GACTTTGTGTCGTGTAACCCGTCTCTGCAGCGGCTGGTGCTCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000014439-'30-30,'30-29,31-30=AN
Average complexity
A_C2
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
TCAGCAACCGTTTCCAGAAC
R:
CACCAGCCGCTGCAGAGA
Band lengths:
140-220
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]