MmuEX7002014 @ mm10
Exon Skipping
Gene
ENSMUSG00000038777 | Sema6c
Description
sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6C [Source:MGI Symbol;Acc:MGI:1338032]
Coordinates
chr3:95170318-95171250:+
Coord C1 exon
chr3:95170318-95170491
Coord A exon
chr3:95170751-95170897
Coord C2 exon
chr3:95171173-95171250
Length
147 bp
Sequences
Splice sites
3' ss Seq
TGCTTATGGCATCAAATTAGGTG
3' ss Score
5.16
5' ss Seq
GAGGTGAGA
5' ss Score
7.66
Exon sequences
Seq C1 exon
GGCCCTGCTGACCCAGGTAGCTGTGGACGGAATGGCTGGTCCCCACAGAAATACTACTGTCCTGTTTCTTGGCTCCAACGATGGGACAGTGCTGAAGGTGCTACCTCCAGGGGGTCAGTCTTTGGGCTCTGAGCCTATCGTCTTGGAAGAGATTGATGCCTACAGCCATGCCCG
Seq A exon
GTGCAGTGGGAAGCGGTCACCCCGAGCTGCGCGGCGGATCATAGGGCTGGAGCTGGACACTGAGGGTCACAGGCTTTTTGTGGCCTTTCCTGGATGTATCGTCTACCTCTCTCTCAGCCGGTGTGCCCGGCATGGAGCATGTCAGAG
Seq C2 exon
GAGCTGCCTGGCTTCTCTGGACCCATACTGTGGATGGCATCGATCCAGAGGCTGCATGAGTATCAGGGGACCTGGTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000038777-'27-36,'27-31,35-36=AN
Average complexity
A_S
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.034 A=0.060 C2=0.089
Domain overlap (PFAM):
C1:
PF0140314=Sema=FE(13.9=100)
A:
PF0140314=Sema=PD(0.5=4.0),PF0143720=PSI=PU(14.5=18.0)
C2:
PF0143720=PSI=FE(41.9=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGCTGACCCAGGTAGCTGT
R:
AGGTCCCCTGATACTCATGCA
Band lengths:
243-390
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types