RnoEX0079395 @ rn6
Exon Skipping
Gene
ENSRNOG00000021101 | Sema6c
Description
semaphorin 6C [Source:RGD Symbol;Acc:3659]
Coordinates
chr2:196340706-196341605:+
Coord C1 exon
chr2:196340706-196340879
Coord A exon
chr2:196341116-196341262
Coord C2 exon
chr2:196341528-196341605
Length
147 bp
Sequences
Splice sites
3' ss Seq
TGCTTATGGCATCAAACTAGGTG
3' ss Score
5.84
5' ss Seq
GAGGTGAGA
5' ss Score
7.66
Exon sequences
Seq C1 exon
GGCTCTACTGACCCAGGTAGCTGTGGATGGTATGGCTGGCCCCCACAGAAATACTACAGTCCTGTTTCTTGGCTCCAATGATGGGACAGTGCTGAAGGTGCTACCTCCAGGGGGACAGTCTCTGGGACCCGAGCCTATCATATTGGAAGAGATTGATGCCTACAGCCATGCCCG
Seq A exon
GTGCAGTGGGAAGCGGTCACCCCGAGCTGCTCGACGGATCATAGGGCTGGAGCTGGACACTGAGGGTCACAGGCTTTTTGTGGCCTTTCCTGGATGCATCGTCTACCTCTCTCTCAGCCGCTGTGCCCGGCATGGAGCATGTCAGAG
Seq C2 exon
GAGCTGCCTGGCTTCTCTGGACCCATACTGTGGATGGCATCGGTTCCGAGGCTGTGTGAATATCAGGGGACCTGGAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000021101-'21-26,'21-23,22-26
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.051 A=0.000 C2=0.025
Domain overlap (PFAM):
C1:
PF0140314=Sema=FE(13.9=100)
A:
PF0140314=Sema=PD(0.2=2.0),PF0143720=PSI=PU(14.5=18.0)
C2:
PF0143720=PSI=FE(41.9=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTCTACTGACCCAGGTAGCT
R:
TCCCCTGATATTCACACAGCCT
Band lengths:
243-390
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]