MmuEX7005707 @ mm10
Exon Skipping
Gene
ENSMUSG00000072723 | Gm10044
Description
predicted gene 10044 [Source:MGI Symbol;Acc:MGI:3641749]
Coordinates
chr14:7756361-7766248:-
Coord C1 exon
chr14:7766215-7766248
Coord A exon
chr14:7764782-7764854
Coord C2 exon
chr14:7756361-7757105
Length
73 bp
Sequences
Splice sites
3' ss Seq
TGGTGGTGTTTATTTTACAGGCC
3' ss Score
9
5' ss Seq
ACTGTGAGT
5' ss Score
7.94
Exon sequences
Seq C1 exon
CCCTGCAAAGAGCACATCTAAAGAAAAGCACGAG
Seq A exon
GCCAAGAAGCAAATCAACGGTGTGGAAGGCCTGGAAGATGGGACTCTGCCGTGTGAAGCAGCCTCAGATGACT
Seq C2 exon
TTGCAGGAAGCACAGTTGCAAGAAGATCCACAGAGGGAAGGTGTCCTGAGTTCTGCAAGAATGGAACATCTGCTATGGAAGTATGGCTTAAAGCCAAATGCAAAAGACCTTAAATATTTGTAAATCTGATCAGCAATATAGTGTGGTGATTATGTTGGCTGTGGCAATAAGCACACCCTGGTTAAGCCCTAGAGACTTTATGTTATGTGCAATGCCTAACAGTGCTATGTTACGTAATTTCCATGGTCACAACCCTGTATGCCACCATCTTTCTCTTTAGTTTCTTAAGAATGGAATCATTAAGAATTGAGAATAATTAGTTATTCTGTAAAATGCCTTATAGGCTGGAAGTTGAGTGTCTCAAGTTAGAAGACTCAGTAAAGAACCAAGCAGAAGAAATTGAAGAGATTGAGAATCAACTGTTACGAGAAGATTTGGTAAATTACTCTCCTATTCACTCCTGCCACCATAAAGAGAAAAGTTCCCGTCCTCAGTGCTAC
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000072723-'15-18,'15-12,17-18=AN
Average complexity
A_C2
Mappability confidence:
100%=100=100%
Protein Impact
NonCoding
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCACATCTAAAGAAAAGCACGAG
R:
AGCCAACATAATCACCACACT
Band lengths:
183-256
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types