RnoEX6051379 @ rn6
Exon Skipping
Gene
ENSRNOG00000057837 | AABR07017236.2
Description
NA
Coordinates
chr15:18949292-18963244:+
Coord C1 exon
chr15:18949292-18949325
Coord A exon
chr15:18950595-18950667
Coord C2 exon
chr15:18963162-18963244
Length
73 bp
Sequences
Splice sites
3' ss Seq
TTGTGGTGTTTATTTTACAGGTC
3' ss Score
10.87
5' ss Seq
ACTGTGAGT
5' ss Score
7.94
Exon sequences
Seq C1 exon
GTATGCAAAGAACACATCTAAAGAAAAGCACGAG
Seq A exon
GTCAAGAAGCTAAAAAATTTTGGGGAAGGCCTGGAGGACGGGACTCTGCCATGTGAAGCGGCCTCAGATGACT
Seq C2 exon
TTGCAGGAAGCGCAGTTGCAGGACGATCCACAGAGAGAAGGTGTCTTGAGCTCTGCAAGAATGGCACATCTGCTATGGAAGTA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000057837-'4-6,'4-2,6-6=AN
Average complexity
A_C3
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=0.340 C2=0.214
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCAAAGAACACATCTAAAGAAAAGCA
R:
GCAGATGTGCCATTCTTGCAG
Band lengths:
103-176
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]