MmuEX7008303 @ mm10
Exon Skipping
Gene
ENSMUSG00000069053 | Uba1y
Description
ubiquitin-activating enzyme, Chr Y [Source:MGI Symbol;Acc:MGI:98891]
Coordinates
chrY:825642-826282:+
Coord C1 exon
chrY:825642-825788
Coord A exon
chrY:825899-826075
Coord C2 exon
chrY:826178-826282
Length
177 bp
Sequences
Splice sites
3' ss Seq
GGTTCCTTTTGTCCAACCAGGAG
3' ss Score
8.12
5' ss Seq
AAGGTCAGC
5' ss Score
7.09
Exon sequences
Seq C1 exon
AAACCCCTACTTGCCTCGCTGGCAGAGCCAGAGTTTGTGGTCACAGATTTTGCTAAGTGCTGTCATCCTGCTCAGCTCCACATTGGCTTCCAGGCCCTGCATCAGTTCTGTACTCAGCACAGCAGGCCTCCTCGGCCCCATAATGAG
Seq A exon
GAGGATGCTGAGGAATTGGTGACCTTAGCCCAATCTGTGAATGCTCAAGCTTTGCCAGCAGTTCAGCAGGATTGCCTGGACATCGACCTTATCCGGAAGTTGGCCTATGTAGCAGCTGGGGACCTGGCACCCATGAATGCCTTTTTTGGTGGTTTGGCTGCCCAGGAGGTCATGAAG
Seq C2 exon
GCTTGTTCTGGAAAGTTTATGCCCATTAGGCAGTGGCTGTACTTTGATGCCCTTGAATGTCTCCCAGAGCACAGAGTGGCCTTCATGGAAGATAAGTGCCTGCCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000069053-'10-16,'10-11,13-16=AN
Average complexity
A_S
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.184 A=0.085 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAACCCCTACTTGCCTCGCT
R:
TGGCAGGCACTTATCTTCCATG
Band lengths:
252-429
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types