MmuINT0005327 @ mm10
Intron Retention
Gene
ENSMUSG00000062116 | Zfp954
Description
zinc finger protein 954 [Source:MGI Symbol;Acc:MGI:1917764]
Coordinates
chr7:7116613-7117912:-
Coord C1 exon
chr7:7117786-7117912
Coord A exon
chr7:7116712-7117785
Coord C2 exon
chr7:7116613-7116711
Length
1074 bp
Sequences
Splice sites
5' ss Seq
TGAGTAAGG
5' ss Score
5.02
3' ss Seq
CACTTCTCATTTTATTTTAGGAC
3' ss Score
10.23
Exon sequences
Seq C1 exon
GGCTGCGTGTCCTTTGAGGATGTGGCTGTGTACTTCTCCTGGGAGGAATGGACACTGCTCGATGACTCTCAAAGGCTCCTGTACCAGACTGTGATGACGGAGATCTTCACACTGGTGTCTTCACTGA
Seq A exon
GTAAGGGACCTCCTATCTTGTCAGAGCACAACTGTGGTAGAAACCAGGAGACATCTTAAAGCTGCCCTATGAACACTCAGTCTTTCCTCAAGTGACCTATAGCTGAAAGTACAGGTTATAGACATAGGCTTGTTACACAACTACCTTTTCACTCTTAAGTACAGTAAAGGCAAACAGGAATCAGTTTGAGGTGACAATATTTGTTTGGGTGGTGGGTTAAGGCAAGGTCTCCTAGAACTCTCTATATTGACCAAGCTGGCTAATATTCACAGAGATCCTTCTGCCTCTGCCTTCCAAGTGCTGGGATTAACGATTTGCACCACTAAGGGGTTAGGAGTCTTAACAGTGGTCATTTCTCCCTGACCTGATGACACTGTAAATGCATGGCATTTCTGTGACAAGTACTACTCTCTCTATCTAGGTGACATGCCTTGTGTCTGTGTGTGCTAGGAATTATGACCCTGGTGGGCTTACTATTTGGTGTTTTTCTTACAAGACACTCTTATGAGGATTGTTCTCATTGGGCATCTTTACTTTCTATTGTTGGGGTTAGTCTTATGTGCTGTGTATTCCCAAACTGAGTTATGTGTCCCAGTCCAGACTACAACCTGATCTTGGGGCACTGTGTAACCGATTTACTGTAAAGAATGCTCCCTAATGATTCCTGGTTGGCCAATAAATGTCTGGGGCTTATGACTGGGCAGAGAAGAGAAGAAGGAGGGACTAAGAATTGAGTGAGGGGTCTCAAGACAGACCATGAAGGGAAGGAGGGGGAAGACAACAGAGAAGGTCGCCATGAGGCAGGTTGGACCATGAGCACGTGACTAAGAGAAGCTTGTCCTAAAGACACACCCGTAACACACAAGCAGGACAAGACTCAAACTACAAGTAACATGAGGCCTGTGATTTGGATAGTGTTTAGAATAGCTCAGGATCTGCCCAGTCTAGGCTTACAGCTTTATTGCACAGGTGCACATTCCCAAGAGACATAAGAGATTCCTTCCAGATTGGATTATTATGAGTTGGAGATCAGCCAGTCCTTATATGGAGCGCTCACTTCTCATTTTATTTTAG
Seq C2 exon
GACTTGAACTTTCTGGGATTCATGATTCAACTCAGGTGGAATCTTGTGGAGATCTCTCTGTGCCTGCACTAAGATTCCTGACTCCGTGTTTATGGACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000062116:ENSMUST00000056246:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0135222=KRAB=WD(100=95.3)
A:
NA
C2:
PF0135222=KRAB=PD(0.1=0.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGCTGCGTGTCCTTTGAGG
R:
TGTCCATAAACACGGAGTCAGG
Band lengths:
225-1299
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types