RnoINT0168763 @ rn6
Intron Retention
Gene
ENSRNOG00000022742 | Zfp954
Description
zinc finger protein 954 [Source:RGD Symbol;Acc:1561308]
Coordinates
chr1:69856205-69857497:+
Coord C1 exon
chr1:69856205-69856331
Coord A exon
chr1:69856332-69857398
Coord C2 exon
chr1:69857399-69857497
Length
1067 bp
Sequences
Splice sites
5' ss Seq
TGAGTAAGG
5' ss Score
5.02
3' ss Seq
CTTGTATTATTTTATTCTAGGAC
3' ss Score
9.65
Exon sequences
Seq C1 exon
GGCTGCGTGTCCTTTGAGGATGTGGCTGTGTACTTCTCCTGGGAGGAATGGACACTGCTTGATGACTCTCAAAGGCTCCTGTACCAGACGGTGATGACAGAAATCTTCACACTAGTGTCCTCCCTGA
Seq A exon
GTAAGGACCTCCTGCCTTGACAGAGCCATGTCTGTGTGGTAGAACCCGGGAGACATGTTCATCTCAAAGCTGGCCTATGAACGCTCTGTCTGTCCCCAACCGTCCTATGGCTAAAAATACAGGCTATAGACAGAGGCTTGTTACACAGCTACCTTTTCACTCTCGAGTATAGTAAAGGCAAACAGTAATCAGTTTGGGGTGACAATATTTGTTTGGGTGGTGGGTTGAGGCTGGGTCTCCTGGAACTCACTGTATTGACCAAGGTGGCTAGAACTCACAGAAATCCTCCTGCCTCTGCTTTCTAAGTACTGGGATCAATGATTTGCACCACTAAGAGGTCAGGAATCATGACAGTGATCATTTCTCTCGGACCTGATGAGACGGTAAATGCATGGCATTTCTCACAGGTACTTCTCTATCTAGGTGATATGCTTTGTGTCTCCCTGTGTGAGGACTGGTGGCTCTGGCGGGCTTAGTCTTTGGTGTTTTTCTTACAAGACACTCTTAGGAGGATTGTTCGCATTAAGCTTCTTTAGTTTGTATTGGTGGGGCTAGTCTTGTGTGCTGTGTATTCCCAAACTGTGTCCCAGCCCAGACTACAACCTGATCTTGGTGCACTGTATTACCCGATGTAAAGAAAGCTCCCCAACAATTCCTGATTGGCCAATAAATGTCTGGGGCTTACGACTGGGCAGAGAGGAGAAGAAGGTAGGACTTAGAATTGAGTGAGGGGTCTCAAGAGAGACCATGAAGGGAAGGAGGGGAAGACAACAGAGAAAAAAGTCACCTTGAGGCACATTGGACCATGAGCACATGGCCAAGAGAAGCTTGTCCTCAAGACACACGTAGAACTACACAGTAGGGCAGGGCGAGACTCAAACTACAAGTGACACGGGGCCTATGATTGATTTGGATATAGGTTAGAATGGCTCAGAATCTGCCCAGTCTAGGCTTACAGCTTTATCTGAGGCTTCCAAACAGGTCTAAGCGATCCCTTCCAAATTGGATTATTATGGGTCAATCAGTCCTTGTACGGAAGACTCACTTCTTGTATTATTTTATTCTAG
Seq C2 exon
GACTTGAACTTTCTGGGATTCAGGATTTGACTCAGGCGGAGTCTTGTGGAGATCTCTCTGTGCCGGCACTGAGGTTCTTGACTCCATGTTTATGGACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000022742:ENSRNOT00000042086:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0135222=KRAB=WD(100=95.3)
A:
NA
C2:
PF0135222=KRAB=PD(0.1=0.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGCTGCGTGTCCTTTGAGG
R:
TCCATAAACATGGAGTCAAGAACCT
Band lengths:
223-1290
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]