MmuINT0007846 @ mm9
Intron Retention
Gene
ENSMUSG00000024130 | Abca3
Description
ATP-binding cassette, sub-family A (ABC1), member 3 [Source:MGI Symbol;Acc:MGI:1351617]
Coordinates
chr17:24494864-24498034:+
Coord C1 exon
chr17:24494864-24494936
Coord A exon
chr17:24494937-24497832
Coord C2 exon
chr17:24497833-24498034
Length
2896 bp
Sequences
Splice sites
5' ss Seq
CTGGTAAGG
5' ss Score
9.68
3' ss Seq
GCACCCTTCATCTACCAAAGGTG
3' ss Score
5.43
Exon sequences
Seq C1 exon
AGAATACAAGAAAATTGCTCACTATCCCTCCACTGTGATGTACTGTCTTGTTCATTCTGCTTGGAAACAACTG
Seq A exon
GTAAGGTTCACAGATGAGGGCCAGACCCTAAAAATGTACCTTTTAGCCTCCCTTTTATTTGATTATATGTGCATCTGCACATATACTCATCTTGATTGATATATTTCATCTGCAGAGTCCATTGCATTTGACATTTTCCAATGTTTAAATCACCTCAGAAAAAAAAAAATCATGAACAAAGTCAGAAGTAGCAGCAAGCCACATATGCTTCAGAGGCTCGAATTGTACCCTGTAACTCTTTCCTGGGGCCTTATATCTGCTCGGCACAATGGGACATGATTTAATGCTACACTTCAAAGGTAGAGGCATATGGATCTAGCCTGGATCTGGAGGCTATTCTGGTGTATATAGCAAGTTCTAGGACAGCCAAGTTACATACTAGGCAGACCCTGTAATCAGCAGCAGTAGCAGCAGCGGCCTCCTCAGTCTGCTTTCATCTCTGTCTCATTGTTTGCTACTGTCAGGTACAAGTCCATGTTCAGGGTAACGGAGTGTTTCTCACAAATGTCCCTTCATTTTTCCATGATCCTCCTGTGACCCCTCAGTGATAAAGCAATTTGAGCACCATGGTCAGCCAGCCCTCTGTCTGTCTTACTTTCTGTCCTGTATACATACAGCTAATTCCTGTCTACTCCAGGATTTTATGTGGAAGCATTAGGCCATGTGGCCTTGTTGGAGGAAGTGTGTCACTGGGGGTGGGCTTTGATGGTTAAGGAGCTCAAGCCAGGCCCAGTGGCTTACTCTCTCTTCTGCTGCCTGTTGATCCAGATGTAGGACTCTTGGCTCCTTCTCCAGCACCATGTCTGCCTGTATGTCACCATGCTTCCTCCATGATGATAATGGACTAAACTTAGGCCTGTAAGCTGGCCGCAGTTAAATGCTTTCCTTTGTAAGAGTTACTATGGCCATGGTGTCTCTTCAAAGCAATGGAAACCTTGACGAAACTGTCTTGACCTAATATCCAACAATTATAAGAGAGACAAGTATTTACAGACTGTAAACTCCTTGGATTGAGAGCATTATTGCATCCATTGGTAAATCCTTACTTAGTGTGTTGTACCCATCACAGCATACATTTGGCAAATGTTCATTGAACGAATAATGCTTTGGTTTTGTATTCTAAAAAGCCACAGATTCTGTCAGCAAATATTAACTAAGTACATTCAGTGCACATTCGGTGCGTGCACACAGACCTTTGGTCCTGGCTGGCTGCTGGGAATTCTCCAGACTGATAATCAGATGTTTTCCTAAGAGCATCTTAAGTAGGGCAAAGTAGTTCCTCGTGCTGAAGGAAGGGCACCGAGAGTGGCCACCTCTGTCATACACCAATGTGAAGCACCGTGGCTGTCAGTCTCTTTGCACAACCTCACGGCCTACTCATGGCCTTATTATTCCGTCTTTTCATGGCTGTGACTTTGTGAAGGGAAGTGCACCAGTGCTGGGCACAAACCCAGGGCCTGGCACCGGCTCCCTGTCACTGTTTTTTTAGGCCCCTCAGTACCCTCAACACCAAGCTTACAAACATTTATGTGGCACCAAGAAATCAGATGACAGAGCTCAGGGAAGCTGCCATGGTGGGTAAGTGGTAGAGTTCTTGCCTGGTGTGCATGGGGCCCTGGTTTTAATCCAGGCACTGACTGGGGTTCTTCCAGCTCACTGCGAGCAGATGCACCACAGGGCTCATGGGCTGGCACAACCCTAGTCCCCAAGCTAAGAGCGACCGTGAGAAAGACCATCTTGACAGGACTCCTACAACCTGCCAACAGAGTTTTCAGAAATCAGCCCTTGCTTTATACCCATTTGATTGCCCACTTCGAATACAAGCATTGAAATACTCATTGCCTTGTGCAATATTTGATATTTTAACCAAGAACAAACAAGGCTTTGGAGCAGGGCGGTGGGGGTGGGGGGACTGCCTTCTCTTTCTGAATGTTTCCTCAGGAGCTAGCTGAGCCCTCTTCAGTTGGACATTCTCAGAGGATTCTTGTAGGGGGTGGGGAGCTAAAGTGACCCAGTGAGTCTTGCTGCTTGCCTTAGAGTCTCTGGCTCTTGTCCTCTCCCTGAGGCCAGCCTCAGATCTCAGCCACTGCCACTTCTGAGGACTCTCTGTTAAGGAGCTTTAACTTCCTTCCCTTGCATACATTGACTTTCGTAACCAGGAAGTGTTCCAGATTTTGTAATTCTAGGATCTCTTTTAGATGCCTTTGCTCAAACAGAACATGCACAAGTGCAAATATGCCTTCACTGAGACTTCAGATAAGGCTTAACGAGGACAAAGCAGTAAGCAGGGTGTTGGGGGGAAATGGGAGCAAATTAAAGCAGTGAAGAGGAGGTGGGACTGACTCTAGGGTCACATTCCAGAAGCGATACAGAAAACCGCTAGGAGGATGTTCACTGAGTCTAGAATATGGAAGATACATATTTTCTACTTTATCTATAAATGTATAATGTATCTATAATATATGTCCTATATATAAAAGATAGAGGCTTAGACAGGCTGAGGTTCAAGCATTGACACTGCTTGCTTTGCAGTTTGCTCTTGGTCAGTACTTTCCTTTGTTCTCCATCTGTCAAGGATGATAATACTCGGAGCCAGAGCCAGATTAGTAGCCATGAGCATACAATGCCAGGCACCACTGTCTCTATGCACCCTGTAGCTCTGCACCTCTCCGGTGTCAGAGCTGTTCTCTTTTAGTGGGATTCTTTACTGAGTGTCGCTGGGGGCCTTGAACCAGGCTCTTGTGAATGTTAGGCATGTGCCCTACTGCTGATCTACACTCCCTGGTCCCTAAGAAACAAAGTCGGAACTCATGTGGCTCTCTTGGTTTCTAACTTGGAAAGAGGTGTTTAATGGTTATTTTTCAAATTATGCTGAAGCACCCTTCATCTACCAAAG
Seq C2 exon
GTGCCAGCACATCATGCCCGTGAGCCCCAGGTCCCTCCAGATGTCCCTGGAGATCTCAGCGTTCCTGCTCCCTAGGGCTGTTGCTTCTGTCCAGGGGACCACTGGCTCCACCCCAGGGTCATCTGTGTAGAACTGCTGACGCCAGGCGACTTCACCCGTAGCCTTGCAGTGACACCTTCAGCCAACCTTTCCTGGAACTAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000024130-Abca3:NM_013855:2
Average complexity
IR-C
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: