MmuINT0007993 @ mm10
Intron Retention
Gene
ENSMUSG00000035722 | Abca7
Description
ATP-binding cassette, sub-family A (ABC1), member 7 [Source:MGI Symbol;Acc:MGI:1351646]
Coordinates
chr10:80002035-80002729:+
Coord C1 exon
chr10:80002035-80002211
Coord A exon
chr10:80002212-80002506
Coord C2 exon
chr10:80002507-80002729
Length
295 bp
Sequences
Splice sites
5' ss Seq
TGTGTGAGA
5' ss Score
0.51
3' ss Seq
ACATAACCCCACCACCCTAGGTT
3' ss Score
5.1
Exon sequences
Seq C1 exon
GTTTTGGGACCCAGGTCCGTCAGCAGATCCTTTCATGGACCTTCGGTATGTGTGGGGAGGCTTCGTGTACCTGCAGGACCTGCTGGAGCAGGCAGCTGTGCGAGTGCTCGGTGGCGGGAACTCCCGCACAGGTCTCTACCTGCAGCAGATGCCACACCCCTGCTACGTGGATGATGT
Seq A exon
GTGAGAGTACCTTGCAACCTGTCTGGGCTCTGTGGTTTGGAGGGGCCCTGCATGGAACCCCATAGGGGACTTAGGGTCTCCCCCTAAAGAAACAAAGTGGCCTGTGCTGGGATCTGGGACCCTTAGACTGGATCAGCGCTCCAAGGCTGCTGCAGAGCCTGGGGACTCCCAATGGACATTTGTGCCACATGCGTGTGTGCGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGCACCCTGTGTGCACCCTCCTGCTGCACTACATAACCCCACCACCCTAG
Seq C2 exon
GTTCCTGCGGGTGCTGAGCCGGTCTCTGCCTCTGTTTCTGACTCTGGCCTGGATTTATTCGGTGGCGCTCACTGTGAAGGCCGTGGTGCGTGAGAAAGAGACACGGCTGCGAGAAACCATGCGTGCGATGGGGCTGAGCCGCGCGGTGCTCTGGCTTGGTTGGTTCCTCAGCTGCCTGGGACCCTTCCTGGTCAGCGCTGCGTTGCTGGTATTAGTGCTTAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000035722:ENSMUST00000132517:13
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF126982=ABC2_membrane_3=PU(9.9=38.3)
A:
NA
C2:
PF126982=ABC2_membrane_3=FE(31.8=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACCTTCGGTATGTGTGGGGAG
R:
GAGGAACCAACCAAGCCAGAG
Band lengths:
308-603
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types